Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0P97_RS27175 Genome accession   NZ_CP043568
Coordinates   5898760..5899308 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas testosteroni strain T5-67     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5893760..5904308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P97_RS27155 - 5894364..5895761 (-) 1398 WP_182285089.1 sulfatase-like hydrolase/transferase -
  F0P97_RS27160 - 5895748..5896914 (-) 1167 WP_182285090.1 serine hydrolase domain-containing protein -
  F0P97_RS27875 - 5897000..5897710 (-) 711 WP_269780083.1 pilin -
  F0P97_RS27170 - 5897725..5898444 (-) 720 WP_182285091.1 FHA domain-containing protein -
  F0P97_RS27175 ssb 5898760..5899308 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  F0P97_RS27180 - 5899579..5900751 (-) 1173 WP_182287328.1 MFS transporter -
  F0P97_RS27185 uvrA 5900978..5904046 (+) 3069 WP_182285092.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=385202 F0P97_RS27175 WP_003064700.1 5898760..5899308(-) (ssb) [Comamonas testosteroni strain T5-67]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=385202 F0P97_RS27175 WP_003064700.1 5898760..5899308(-) (ssb) [Comamonas testosteroni strain T5-67]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCTGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGTGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAGCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGTGGTGGTCAGCAGCAAGGCGGCTATGGCAGCGATGACGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCCCCCCAGCGTGCAGCTTCAGGGTTTGACGACATGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment