Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   F0P95_RS16520 Genome accession   NZ_CP043567
Coordinates   3628261..3629319 (-) Length   352 a.a.
NCBI ID   WP_104940255.1    Uniprot ID   -
Organism   Stenotrophomonas acidaminiphila strain T0-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3623261..3634319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P95_RS16495 - 3623321..3624331 (-) 1011 WP_182335137.1 MoxR family ATPase -
  F0P95_RS16500 - 3624448..3626337 (-) 1890 WP_182335138.1 type IV pilus secretin PilQ family protein -
  F0P95_RS16505 - 3626359..3626895 (-) 537 WP_182335139.1 pilus assembly protein PilP -
  F0P95_RS16510 pilO 3626895..3627572 (-) 678 WP_182335140.1 type 4a pilus biogenesis protein PilO -
  F0P95_RS16515 - 3627569..3628261 (-) 693 WP_182335141.1 PilN domain-containing protein -
  F0P95_RS16520 pilM 3628261..3629319 (-) 1059 WP_104940255.1 pilus assembly protein PilM Machinery gene
  F0P95_RS16525 - 3629537..3631969 (+) 2433 WP_182335143.1 penicillin-binding protein 1A -
  F0P95_RS16530 - 3632046..3632672 (+) 627 WP_182335144.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37413.99 Da        Isoelectric Point: 4.4316

>NTDB_id=385186 F0P95_RS16520 WP_104940255.1 3628261..3629319(-) (pilM) [Stenotrophomonas acidaminiphila strain T0-18]
MGLIPKSQPPIIGVDISSTAVKLLQLARSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVARSGTRAKGAAAA
VAGSAVITKVIPMPADLDEADMEAQVELEAVNYIPYPIEEVSLDFEVLGPVPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAIENAFALVASELPVASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQIGRLLQFFYAGSEFNRVDHIVLAGGCASLPGLPVMVEEQLGVSTSVANPLA
QMTLGQKVQAHALAQDAPALMIATGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=385186 F0P95_RS16520 WP_104940255.1 3628261..3629319(-) (pilM) [Stenotrophomonas acidaminiphila strain T0-18]
GTGGGGCTTATCCCAAAGAGTCAGCCACCGATCATCGGTGTTGACATCAGCTCGACTGCGGTGAAGCTGCTTCAGCTCGC
CCGCAGCGGCAATCGCTTTCGCGTGGAACATTACGCCGTGGAACCACTTCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAGGCCATACGCCGTGCCGTGGCGCGCTCGGGAACCCGCGCCAAGGGCGCGGCCGCCGCG
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGCCGACATGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTATCCGATCGAGGAAGTGAGCCTGGATTTCGAGGTGCTCGGGCCGGTGCCCAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAATGTCGAACTGCGCCAGTCGGCGCTGGAGCTGGGC
GGCCTGGTGGCCAAGGTCATGGACGTGGAAGCGTTCGCGATCGAGAACGCCTTCGCGCTGGTGGCCAGCGAACTGCCGGT
GGCCAGTGACGGCGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACCACGCTCAACGTCCTGCGTGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGCTACGGGCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAGAGCTACGAGGTGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCGGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAATCGCGTCGATCACATCGTGCTGGCCGGCG
GCTGCGCGTCGCTGCCGGGGCTGCCGGTGATGGTCGAGGAGCAGCTGGGGGTGAGCACGTCGGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGGCAGAAGGTGCAGGCGCATGCGCTGGCCCAGGATGCCCCGGCGCTGATGATCGCCACCGGCCTGGC
CCTGCGGGGGTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

100

0.5
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

50.292

97.159

0.489
  pilM Legionella pneumophila strain ERS1305867

46.857

99.432

0.466

Multiple sequence alignment