Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BAMF_RS38690 Genome accession   NC_014551
Coordinates   3629697..3629816 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624697..3634816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS38670 (BAMF_3569) - 3625899..3626327 (-) 429 WP_013353951.1 DUF1934 domain-containing protein -
  BAMF_RS41945 - 3626481..3626940 (+) 460 Protein_3669 bacteriocin biosynthesis protein AlbG -
  BAMF_RS38680 - 3626946..3628339 (-) 1394 Protein_3670 YncE family protein -
  BAMF_RS38685 (BAMF_3573) rapF 3628568..3629713 (+) 1146 WP_013353955.1 tetratricopeptide repeat protein Regulator
  BAMF_RS38690 phrF 3629697..3629816 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BAMF_RS38695 (BAMF_3574) speB 3629930..3630802 (-) 873 WP_013353956.1 agmatinase -
  BAMF_RS38700 (BAMF_3575) speE 3630861..3631691 (-) 831 WP_013353957.1 spermidine synthase -
  BAMF_RS38705 (BAMF_3576) - 3631891..3633963 (+) 2073 WP_013353958.1 transglycosylase domain-containing protein -
  BAMF_RS38710 (BAMF_3577) - 3633988..3634419 (-) 432 WP_013353959.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=38518 BAMF_RS38690 WP_014471166.1 3629697..3629816(+) (phrF) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=38518 BAMF_RS38690 WP_014471166.1 3629697..3629816(+) (phrF) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment