Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EVS87_RS11505 Genome accession   NZ_CP043559
Coordinates   2226425..2226718 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain CHB19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221425..2231718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS11455 (EVS87_011455) sinR 2221589..2221924 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  EVS87_RS11460 (EVS87_011460) tasA 2221992..2222792 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  EVS87_RS11465 (EVS87_011465) sipW 2222851..2223423 (-) 573 WP_017357979.1 signal peptidase I SipW -
  EVS87_RS11470 (EVS87_011470) tapA 2223473..2224000 (-) 528 WP_135009242.1 amyloid fiber anchoring/assembly protein TapA -
  EVS87_RS11475 (EVS87_011475) - 2224253..2224579 (+) 327 WP_058336653.1 DUF3889 domain-containing protein -
  EVS87_RS11480 (EVS87_011480) - 2224614..2224808 (-) 195 WP_135009243.1 YqzE family protein -
  EVS87_RS11485 (EVS87_011485) - 2224869..2225252 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  EVS87_RS11490 (EVS87_011490) comGF 2225249..2225746 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  EVS87_RS11495 (EVS87_011495) comGE 2225688..2226002 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  EVS87_RS11500 (EVS87_011500) comGD 2225986..2226432 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  EVS87_RS11505 (EVS87_011505) comGC 2226425..2226718 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  EVS87_RS11510 (EVS87_011510) comGB 2226735..2227775 (-) 1041 WP_058336649.1 competence type IV pilus assembly protein ComGB -
  EVS87_RS11515 (EVS87_011515) comGA 2227756..2228826 (-) 1071 WP_035390817.1 competence type IV pilus ATPase ComGA Machinery gene
  EVS87_RS11520 (EVS87_011520) - 2229284..2230156 (-) 873 WP_041506953.1 STAS domain-containing protein -
  EVS87_RS11530 (EVS87_011530) - 2230382..2230762 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  EVS87_RS11535 (EVS87_011535) - 2230975..2231217 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=385116 EVS87_RS11505 WP_008342186.1 2226425..2226718(-) (comGC) [Bacillus altitudinis strain CHB19]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=385116 EVS87_RS11505 WP_008342186.1 2226425..2226718(-) (comGC) [Bacillus altitudinis strain CHB19]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment