Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EVS87_RS11455 Genome accession   NZ_CP043559
Coordinates   2221589..2221924 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2216589..2226924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS11435 (EVS87_011435) gcvT 2217065..2218162 (-) 1098 WP_135009240.1 glycine cleavage system aminomethyltransferase GcvT -
  EVS87_RS11440 (EVS87_011440) - 2218724..2220394 (+) 1671 WP_135009241.1 DEAD/DEAH box helicase -
  EVS87_RS11445 (EVS87_011445) - 2220409..2221206 (+) 798 WP_017367588.1 YqhG family protein -
  EVS87_RS11450 (EVS87_011450) - 2221391..2221555 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  EVS87_RS11455 (EVS87_011455) sinR 2221589..2221924 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  EVS87_RS11460 (EVS87_011460) tasA 2221992..2222792 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  EVS87_RS11465 (EVS87_011465) sipW 2222851..2223423 (-) 573 WP_017357979.1 signal peptidase I SipW -
  EVS87_RS11470 (EVS87_011470) tapA 2223473..2224000 (-) 528 WP_135009242.1 amyloid fiber anchoring/assembly protein TapA -
  EVS87_RS11475 (EVS87_011475) - 2224253..2224579 (+) 327 WP_058336653.1 DUF3889 domain-containing protein -
  EVS87_RS11480 (EVS87_011480) - 2224614..2224808 (-) 195 WP_135009243.1 YqzE family protein -
  EVS87_RS11485 (EVS87_011485) - 2224869..2225252 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  EVS87_RS11490 (EVS87_011490) comGF 2225249..2225746 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  EVS87_RS11495 (EVS87_011495) comGE 2225688..2226002 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  EVS87_RS11500 (EVS87_011500) comGD 2225986..2226432 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  EVS87_RS11505 (EVS87_011505) comGC 2226425..2226718 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=385115 EVS87_RS11455 WP_017357978.1 2221589..2221924(+) (sinR) [Bacillus altitudinis strain CHB19]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=385115 EVS87_RS11455 WP_017357978.1 2221589..2221924(+) (sinR) [Bacillus altitudinis strain CHB19]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment