Detailed information NTG0038510

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BAMF_RS37760
• Genome accession: NC_014551
• Coordinates: 3442590..3443279 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens DSM 7 = ATCC 23350
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3437590..3448279

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMF_RS37725 (BAMF_3379)	fliW	3437680..3438111 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
BAMF_RS37730 (BAMF_3380)	-	3438141..3438710 (-)	570	WP_014471091.1	DUF6470 family protein	-
BAMF_RS37735 (BAMF_3381)	flgL	3438802..3439719 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
BAMF_RS37740 (BAMF_3382)	flgK	3439731..3441248 (-)	1518	WP_013353779.1	flagellar hook-associated protein FlgK	-
BAMF_RS37745 (BAMF_3383)	-	3441264..3441746 (-)	483	WP_013353780.1	flagellar protein FlgN	-
BAMF_RS37750 (BAMF_3384)	flgM	3441761..3442027 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
BAMF_RS37755 (BAMF_3385)	-	3442097..3442516 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
BAMF_RS37760 (BAMF_3386)	comFC	3442590..3443279 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
BAMF_RS37765 (BAMF_3387)	-	3443285..3443569 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
BAMF_RS37770 (BAMF_3388)	comFA	3443628..3445013 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
BAMF_RS37775 (BAMF_3389)	-	3445120..3445968 (-)	849	WP_013353786.1	DegV family protein	-
BAMF_RS37780 (BAMF_3390)	degU	3446065..3446754 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
BAMF_RS37785 (BAMF_3391)	degS	3446831..3447994 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=38510 BAMF_RS37760 WP_198315882.1 3442590..3443279(-) (comFC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=38510 BAMF_RS37760 WP_198315882.1 3442590..3443279(-) (comFC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362