Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CVCAS_RS11525 Genome accession   NC_017486
Coordinates   2293136..2293729 (-) Length   197 a.a.
NCBI ID   WP_014570853.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2288136..2298729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS13340 (CVCAS_2249) - 2288355..2288507 (-) 153 WP_014570850.1 hypothetical protein -
  CVCAS_RS11500 (CVCAS_2250) - 2288612..2289229 (-) 618 WP_003131990.1 AAA family ATPase -
  CVCAS_RS11505 (CVCAS_2251) - 2289226..2290410 (-) 1185 WP_014570851.1 ABC transporter permease -
  CVCAS_RS11510 (CVCAS_2252) - 2290477..2290767 (-) 291 WP_003131992.1 hypothetical protein -
  CVCAS_RS11515 (CVCAS_2253) - 2290987..2291871 (-) 885 WP_014570852.1 XRE/MutR family transcriptional regulator -
  CVCAS_RS11520 (CVCAS_2254) ruvB 2292008..2293009 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CVCAS_RS11525 (CVCAS_2255) ruvA 2293136..2293729 (-) 594 WP_014570853.1 Holliday junction branch migration protein RuvA Machinery gene
  CVCAS_RS11530 (CVCAS_2256) hexB 2293842..2295812 (-) 1971 WP_014570854.1 DNA mismatch repair endonuclease MutL Machinery gene
  CVCAS_RS11535 (CVCAS_2257) - 2295941..2296636 (-) 696 WP_003131997.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21148.69 Da        Isoelectric Point: 5.8174

>NTDB_id=38509 CVCAS_RS11525 WP_014570853.1 2293136..2293729(-) (ruvA) [Lactococcus lactis subsp. lactis CV56]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAIQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=38509 CVCAS_RS11525 WP_014570853.1 2293136..2293729(-) (ruvA) [Lactococcus lactis subsp. lactis CV56]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCAGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATACAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462

Multiple sequence alignment