Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0R75_RS08310 Genome accession   NZ_CP043552
Coordinates   1676343..1676831 (-) Length   162 a.a.
NCBI ID   WP_149369062.1    Uniprot ID   -
Organism   Francisella marina strain E95-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1671343..1681831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0R75_RS08295 (F0R75_08295) - 1671533..1672966 (-) 1434 WP_149369065.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  F0R75_RS08300 (F0R75_08300) pta 1672982..1675078 (-) 2097 WP_149369064.1 phosphate acetyltransferase -
  F0R75_RS08305 (F0R75_08305) - 1675088..1676242 (-) 1155 WP_149369063.1 acetate kinase -
  F0R75_RS08310 (F0R75_08310) ssb 1676343..1676831 (-) 489 WP_149369062.1 single-stranded DNA-binding protein Machinery gene
  F0R75_RS08315 (F0R75_08315) - 1676909..1677364 (-) 456 WP_013921902.1 regulatory protein RecX -
  F0R75_RS08320 (F0R75_08320) recA 1677351..1678424 (-) 1074 WP_013921901.1 recombinase RecA Machinery gene
  F0R75_RS08325 (F0R75_08325) secB 1678451..1678900 (-) 450 WP_013921900.1 protein-export chaperone SecB -
  F0R75_RS08330 (F0R75_08330) - 1678920..1679342 (-) 423 WP_149369061.1 rhodanese-like domain-containing protein -
  F0R75_RS08335 (F0R75_08335) - 1679493..1680032 (-) 540 WP_013921898.1 OmpH family outer membrane protein -
  F0R75_RS08340 (F0R75_08340) - 1680124..1681047 (-) 924 WP_149369060.1 S49 family peptidase -
  F0R75_RS08345 (F0R75_08345) - 1681135..1681491 (+) 357 WP_149369059.1 (2Fe-2S) ferredoxin domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17916.67 Da        Isoelectric Point: 5.8631

>NTDB_id=385031 F0R75_RS08310 WP_149369062.1 1676343..1676831(-) (ssb) [Francisella marina strain E95-16]
MAKGTVNKVILLGRLGNDPEVRTTQNGTTVATLSIATNDGMGENITTEWHRVVVFGKSAEAIQRYANKGTQLFIEGRLRT
NKWQDKNGNMQYTTEVVVSNFQFVGGGNSQGSSNYQNNPNPNFNQQPNNGFAQNNQQPAPKQDKMPDFAEINSSNFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=385031 F0R75_RS08310 WP_149369062.1 1676343..1676831(-) (ssb) [Francisella marina strain E95-16]
ATGGCCAAAGGAACAGTAAATAAGGTTATTTTGTTAGGTAGATTAGGTAATGATCCAGAAGTTAGAACTACTCAAAACGG
TACTACAGTAGCTACACTAAGTATCGCAACTAATGATGGTATGGGTGAAAATATAACCACTGAGTGGCATAGAGTTGTTG
TGTTTGGTAAGTCTGCAGAGGCTATCCAAAGATATGCAAATAAAGGTACACAGCTTTTTATAGAAGGTAGGCTTCGTACT
AACAAGTGGCAAGATAAAAACGGTAATATGCAATATACTACAGAAGTTGTTGTTAGTAATTTCCAGTTTGTTGGTGGTGG
TAATTCTCAGGGTAGTTCAAACTACCAAAACAACCCTAATCCCAACTTTAATCAACAGCCTAATAATGGTTTTGCTCAAA
ATAATCAGCAACCAGCACCAAAACAGGATAAAATGCCTGATTTTGCTGAGATTAATTCATCAAACTTTGATGATGATATA
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.82

100

0.481
  ssb Glaesserella parasuis strain SC1401

43.82

100

0.481
  ssb Neisseria gonorrhoeae MS11

33.702

100

0.377
  ssb Neisseria meningitidis MC58

34.091

100

0.37

Multiple sequence alignment