Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CVCAS_RS10715 Genome accession   NC_017486
Coordinates   2144404..2144835 (-) Length   143 a.a.
NCBI ID   WP_014570794.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139404..2149835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS10675 (CVCAS_2096) - 2139416..2140282 (+) 867 WP_003129984.1 RluA family pseudouridine synthase -
  CVCAS_RS10680 (CVCAS_2097) - 2140321..2141130 (-) 810 WP_014570791.1 metal ABC transporter permease -
  CVCAS_RS10685 (CVCAS_2098) - 2141123..2141860 (-) 738 WP_003129989.1 metal ABC transporter ATP-binding protein -
  CVCAS_RS10690 (CVCAS_2099) - 2142037..2142879 (-) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  CVCAS_RS10695 (CVCAS_2100) - 2142876..2143313 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  CVCAS_RS10700 (CVCAS_2101) comGG 2143395..2143688 (-) 294 WP_043991170.1 competence type IV pilus minor pilin ComGG Machinery gene
  CVCAS_RS10705 (CVCAS_2102) comGF 2143727..2144173 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  CVCAS_RS10710 (CVCAS_2103) comGE 2144136..2144432 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  CVCAS_RS10715 (CVCAS_2104) comGD 2144404..2144835 (-) 432 WP_014570794.1 competence type IV pilus minor pilin ComGD Machinery gene
  CVCAS_RS10720 (CVCAS_2105) comGC 2144795..2145064 (-) 270 WP_003129998.1 competence type IV pilus major pilin ComGC Machinery gene
  CVCAS_RS10725 (CVCAS_2106) - 2145211..2145735 (-) 525 WP_014570795.1 GNAT family N-acetyltransferase -
  CVCAS_RS10730 (CVCAS_2107) - 2145814..2146593 (-) 780 WP_014570796.1 peptidoglycan amidohydrolase family protein -
  CVCAS_RS10735 (CVCAS_2108) - 2146593..2146892 (-) 300 WP_014570797.1 phage holin -
  CVCAS_RS10740 (CVCAS_2109) - 2146905..2147255 (-) 351 WP_014570798.1 hypothetical protein -
  CVCAS_RS10745 (CVCAS_2110) - 2147268..2147504 (-) 237 WP_014570799.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16546.59 Da        Isoelectric Point: 9.6891

>NTDB_id=38500 CVCAS_RS10715 WP_014570794.1 2144404..2144835(-) (comGD) [Lactococcus lactis subsp. lactis CV56]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQIVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=38500 CVCAS_RS10715 WP_014570794.1 2144404..2144835(-) (comGD) [Lactococcus lactis subsp. lactis CV56]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAATAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.734

100

0.657
  comGD Streptococcus gordonii str. Challis substr. CH1

39.007

98.601

0.385

Multiple sequence alignment