Detailed information NTG0038497

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BAMF_RS33400
• Genome accession: NC_014551
• Coordinates: 2601216..2603594 (-)
• Length: 792 a.a.
• NCBI ID: WP_013353018.1
• Uniprot ID: A0A9P1JIN2
• Organism: Bacillus amyloliquefaciens DSM 7 = ATCC 23350
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2596216..2608594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMF_RS33370 (BAMF_2551)	-	2597303..2598031 (+)	729	WP_013353013.1	amino acid ABC transporter ATP-binding protein	-
BAMF_RS33375 (BAMF_2552)	-	2598052..2598879 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
BAMF_RS33380 (BAMF_2553)	-	2598937..2599581 (+)	645	WP_013353015.1	amino acid ABC transporter permease	-
BAMF_RS33385 (BAMF_2554)	-	2599600..2600256 (+)	657	WP_013353016.1	amino acid ABC transporter permease	-
BAMF_RS40900 (BAMF_2555)	-	2600290..2600421 (-)	132	WP_003152741.1	YrzQ family protein	-
BAMF_RS33390 (BAMF_2556)	-	2600443..2600634 (-)	192	WP_003152738.1	hypothetical protein	-
BAMF_RS33395 (BAMF_2557)	-	2600647..2601105 (-)	459	WP_041481661.1	hypothetical protein	-
BAMF_RS33400 (BAMF_2558)	recD2	2601216..2603594 (-)	2379	WP_013353018.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BAMF_RS33405 (BAMF_2559)	-	2603613..2604233 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
BAMF_RS33410 (BAMF_2560)	mnmA	2604321..2605436 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAMF_RS33415 (BAMF_2561)	-	2605473..2606612 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
BAMF_RS33420 (BAMF_2562)	cymR	2606631..2607047 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
BAMF_RS33425 (BAMF_2563)	-	2607242..2608510 (+)	1269	WP_013353023.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88376.13 Da
• Isoelectric Point: 4.9881

>NTDB_id=38497 BAMF_RS33400 WP_013353018.1 2601216..2603594(-) (recD2) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGEKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=38497 BAMF_RS33400 WP_013353018.1 2601216..2603594(-) (recD2) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTTATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAGGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACACCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATTATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATATGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGAAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGACGGAGGCCGGGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGTCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATCCAGCTCATCGTCGTGGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGTCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAATATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886