Detailed information NTG0384820

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HG564_RS02035
• Genome accession: NZ_CP051503
• Coordinates: 424810..425826 (-)
• Length: 338 a.a.
• NCBI ID: WP_202172027.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-014
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 419810..430826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG564_RS02010 (HG564_02010)	queA	419972..421009 (-)	1038	WP_202172025.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HG564_RS02015 (HG564_02015)	tatC	421010..421795 (-)	786	WP_000461251.1	twin-arginine translocase subunit TatC	-
HG564_RS02020 (HG564_02020)	tatB	421788..422270 (-)	483	WP_202172026.1	Sec-independent protein translocase protein TatB	-
HG564_RS02030 (HG564_02030)	-	422538..424652 (-)	2115	WP_000958896.1	DNA (cytosine-5-)-methyltransferase	-
HG564_RS02035 (HG564_02035)	ruvB	424810..425826 (-)	1017	WP_202172027.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HG564_RS02040 (HG564_02040)	panB	425827..426639 (-)	813	WP_000062661.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
HG564_RS02045 (HG564_02045)	-	426787..427509 (+)	723	WP_000523341.1	hypothetical protein	-
HG564_RS02050 (HG564_02050)	-	427499..428353 (+)	855	WP_014534209.1	outer membrane beta-barrel protein	-
HG564_RS02055 (HG564_02055)	-	428365..429306 (+)	942	WP_000669907.1	outer membrane beta-barrel protein	-
HG564_RS02060 (HG564_02060)	-	429316..430638 (+)	1323	WP_202172028.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37409.36 Da
• Isoelectric Point: 6.0715

>NTDB_id=384820 HG564_RS02035 WP_202172027.1 424810..425826(-) (ruvB) [Helicobacter pylori strain SHIM-014]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTTTPTPASLF

Nucleotide

• Length: 1017 bp

>NTDB_id=384820 HG564_RS02035 WP_202172027.1 424810..425826(-) (ruvB) [Helicobacter pylori strain SHIM-014]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTTTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCTGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCCAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGATCAGGTCCGGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGACTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCTACAACCACCCCTACTCCAGCAAGTCTATTTTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	96.988	98.225	0.953
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.87	95.562	0.515
ruvB	Synechocystis sp. PCC 6803	51.875	94.675	0.491
ruvB	Streptococcus pneumoniae TIGR4	50.774	95.562	0.485
ruvB	Streptococcus pneumoniae R6	50.774	95.562	0.485
ruvB	Streptococcus pneumoniae D39	50.774	95.562	0.485