Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FTN78_RS11155 | Genome accession | NZ_CP043523 |
| Coordinates | 2155145..2155645 (+) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2150145..2160645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTN78_RS11140 (FTN78_chr2228) | - | 2151788..2153254 (-) | 1467 | WP_021214997.1 | amino acid permease | - |
| FTN78_RS11145 (FTN78_chr2229) | - | 2153776..2154630 (+) | 855 | WP_010906372.1 | undecaprenyl-diphosphate phosphatase | - |
| FTN78_RS11150 (FTN78_chr2230) | rpsF | 2154822..2155115 (+) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| FTN78_RS11155 (FTN78_chr2231) | ssb | 2155145..2155645 (+) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| FTN78_RS11160 (FTN78_chr2232) | rpsR | 2155819..2156064 (+) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| FTN78_RS11165 (FTN78_chr2233) | - | 2156264..2157037 (+) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| FTN78_RS11170 (FTN78_chr2234) | - | 2157111..2157419 (-) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| FTN78_RS11175 (FTN78_chr2235) | - | 2157457..2158305 (-) | 849 | WP_010906370.1 | MurR/RpiR family transcriptional regulator | - |
| FTN78_RS11180 (FTN78_chr2236) | gnd | 2158669..2159574 (+) | 906 | WP_031297004.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=384789 FTN78_RS11155 WP_003131953.1 2155145..2155645(+) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=384789 FTN78_RS11155 WP_003131953.1 2155145..2155645(+) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |