Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0U61_RS09215 Genome accession   NZ_CP043493
Coordinates   2225996..2226511 (+) Length   171 a.a.
NCBI ID   WP_395838946.1    Uniprot ID   -
Organism   Archangium violaceum strain Cbvi 34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2220996..2231511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U61_RS09200 (F0U61_09140) - 2221586..2222506 (+) 921 WP_395838942.1 tol-pal system YbgF family protein -
  F0U61_RS09205 (F0U61_09145) - 2222556..2223347 (+) 792 WP_395838944.1 SDR family oxidoreductase -
  F0U61_RS09210 (F0U61_09150) dacB 2223571..2225811 (+) 2241 WP_395844776.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  F0U61_RS09215 (F0U61_09155) ssb 2225996..2226511 (+) 516 WP_395838946.1 single-stranded DNA-binding protein Machinery gene
  F0U61_RS09220 (F0U61_09160) - 2226612..2227328 (-) 717 WP_395838949.1 succinate dehydrogenase -
  F0U61_RS09225 (F0U61_09165) - 2227584..2228483 (+) 900 WP_395838953.1 Hsp33 family molecular chaperone HslO -
  F0U61_RS09230 (F0U61_09170) - 2228578..2229249 (+) 672 WP_395816719.1 phosphoribosyltransferase -
  F0U61_RS09235 (F0U61_09175) selB 2229272..2231188 (+) 1917 WP_395838956.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 17873.54 Da        Isoelectric Point: 5.2866

>NTDB_id=384576 F0U61_RS09215 WP_395838946.1 2225996..2226511(+) (ssb) [Archangium violaceum strain Cbvi 34]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGASGGGGGGGGRGYSQQRGGGQQQGGGGGYDDYGPPPMGMDEGGGG
GNGGGDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=384576 F0U61_RS09215 WP_395838946.1 2225996..2226511(+) (ssb) [Archangium violaceum strain Cbvi 34]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGACCCGGAGGTGCGCTTTACCCCGGGCGGCCA
GGCGGTCGCCAACTTCCGCATCGCGACCAGCGATACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGTCGCCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGACGGCGCCGGAGCGAGCGGTGGTGGGGGTGGTGGTGGCGGCCGCGGCTACTCGCAGCAGCGTGGCG
GGGGCCAGCAGCAGGGCGGCGGCGGCGGGTACGACGACTACGGCCCTCCCCCCATGGGCATGGACGAGGGCGGTGGCGGT
GGCAACGGCGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.826

100

0.515
  ssb Neisseria meningitidis MC58

43.503

100

0.45
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.45
  ssb Glaesserella parasuis strain SC1401

39.894

100

0.439

Multiple sequence alignment