Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0U62_RS07805 Genome accession   NZ_CP043492
Coordinates   1863875..1864402 (+) Length   175 a.a.
NCBI ID   WP_395854558.1    Uniprot ID   -
Organism   Cystobacter fuscus strain Cbf 8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1858875..1869402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U62_RS07795 (F0U62_07820) - 1860491..1861282 (+) 792 WP_395854556.1 SDR family oxidoreductase -
  F0U62_RS07800 (F0U62_07825) dacB 1861468..1863693 (+) 2226 WP_395854557.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  F0U62_RS07805 (F0U62_07830) ssb 1863875..1864402 (+) 528 WP_395854558.1 single-stranded DNA-binding protein Machinery gene
  F0U62_RS07810 (F0U62_07835) - 1864498..1865211 (-) 714 WP_395854559.1 succinate dehydrogenase -
  F0U62_RS07815 (F0U62_07840) - 1865480..1866379 (+) 900 WP_395854560.1 Hsp33 family molecular chaperone HslO -
  F0U62_RS07820 (F0U62_07845) - 1866473..1867114 (+) 642 WP_395854561.1 phosphoribosyltransferase -
  F0U62_RS07825 (F0U62_07850) selB 1867140..1869056 (+) 1917 WP_395854562.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18143.85 Da        Isoelectric Point: 5.7827

>NTDB_id=384563 F0U62_RS07805 WP_395854558.1 1863875..1864402(+) (ssb) [Cystobacter fuscus strain Cbf 8]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDNWTDKSGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYIEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGMSGGGGGGGGGRGGGYSQQRGGGGGGQSQGGGYDDYGAPPMDDGG
GPMGGGHGGDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=384563 F0U62_RS07805 WP_395854558.1 1863875..1864402(+) (ssb) [Cystobacter fuscus strain Cbf 8]
ATGGCTGGAGGCGTCAACAAGGTCATCCTCATTGGCAACCTGGGGGCGGACCCGGAAGTGCGCTTCACCCCGGGCGGACA
GGCGGTGGCCAACTTCCGCATCGCGACCAGCGACAACTGGACCGACAAGAGCGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTGGTGTGGGGAAAGCTCGCGGAGCTGTGCGGTGAGTATTTGAAGAAGGGCCGCCAGTGCTACATCGAGGGC
CGTCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGCAAGAATTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGACGGCGCGGGCATGAGTGGTGGCGGCGGTGGTGGGGGCGGGGGCCGCGGTGGGGGCTACTCGCAGC
AGCGCGGCGGCGGTGGTGGCGGCCAGTCCCAGGGCGGCGGCTACGACGACTACGGCGCTCCGCCCATGGACGATGGCGGT
GGCCCCATGGGTGGCGGCCACGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.283

100

0.497
  ssb Glaesserella parasuis strain SC1401

40.212

100

0.434
  ssb Neisseria meningitidis MC58

42.697

100

0.434
  ssb Neisseria gonorrhoeae MS11

42.697

100

0.434

Multiple sequence alignment