Detailed information NTG0038456

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMF_RS22160
• Genome accession: NC_014551
• Coordinates: 387686..388834 (+)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens DSM 7 = ATCC 23350
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 382686..393834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMF_RS22140 (BAMF_0340)	-	383081..383764 (-)	684	WP_013351000.1	ABC transporter ATP-binding protein	-
BAMF_RS22145 (BAMF_0341)	-	383779..385215 (-)	1437	WP_013351001.1	ABC transporter permease	-
BAMF_RS22150 (BAMF_0342)	-	385428..386111 (+)	684	WP_013351002.1	response regulator transcription factor	-
BAMF_RS22155 (BAMF_0343)	-	386098..387525 (+)	1428	WP_161988189.1	sensor histidine kinase	-
BAMF_RS22160 (BAMF_0344)	rapC	387686..388834 (+)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
BAMF_RS22165 (BAMF_0345)	phrC	388818..388937 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BAMF_RS40525 (BAMF_0346)	-	389085..389186 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
BAMF_RS22175 (BAMF_0347)	-	389281..390645 (-)	1365	WP_013351007.1	aspartate kinase	-
BAMF_RS22180 (BAMF_0348)	ceuB	391059..392012 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
BAMF_RS22185 (BAMF_0349)	-	392002..392949 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
BAMF_RS22190 (BAMF_0350)	-	392943..393701 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=38456 BAMF_RS22160 WP_013351004.1 387686..388834(+) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=38456 BAMF_RS22160 WP_013351004.1 387686..388834(+) (rapC) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAGCGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTTATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571