Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F0U63_RS07075 Genome accession   NZ_CP043491
Coordinates   1688882..1689415 (+) Length   177 a.a.
NCBI ID   WP_395845004.1    Uniprot ID   -
Organism   Cystobacter fuscus strain Cbf 10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1683882..1694415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U63_RS07065 (F0U63_07105) - 1685498..1686289 (+) 792 WP_395845000.1 SDR family oxidoreductase -
  F0U63_RS07070 (F0U63_07110) dacB 1686475..1688700 (+) 2226 WP_395845002.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  F0U63_RS07075 (F0U63_07115) ssb 1688882..1689415 (+) 534 WP_395845004.1 single-stranded DNA-binding protein Machinery gene
  F0U63_RS07080 (F0U63_07120) - 1689510..1690223 (-) 714 WP_395845006.1 succinate dehydrogenase -
  F0U63_RS07085 (F0U63_07125) - 1690491..1691390 (+) 900 WP_395845008.1 Hsp33 family molecular chaperone HslO -
  F0U63_RS07090 (F0U63_07130) - 1691485..1692126 (+) 642 WP_395845010.1 phosphoribosyltransferase -
  F0U63_RS07095 (F0U63_07135) selB 1692152..1694068 (+) 1917 WP_395845012.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18286.01 Da        Isoelectric Point: 5.7827

>NTDB_id=384549 F0U63_RS07075 WP_395845004.1 1688882..1689415(+) (ssb) [Cystobacter fuscus strain Cbf 10]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDNWTDKSGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYIEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGVGMSGGGGGGGGGGRGGGYSQQRGGGGGGGQSQGGGYDDYGAPPMDD
GGGPMGGGHGGDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=384549 F0U63_RS07075 WP_395845004.1 1688882..1689415(+) (ssb) [Cystobacter fuscus strain Cbf 10]
ATGGCTGGAGGCGTCAACAAGGTCATCCTCATTGGCAATCTGGGGGCGGACCCGGAAGTGCGCTTCACCCCGGGCGGACA
GGCGGTGGCCAACTTCCGCATCGCGACCAGCGACAACTGGACCGACAAGAGCGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTGGTGTGGGGAAAGCTCGCGGAGCTGTGCGGTGAGTATTTGAAGAAGGGCCGCCAGTGCTACATCGAGGGC
CGTCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGCAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGGGGCCGTGACGGCGTCGGCATGAGTGGTGGCGGCGGCGGCGGTGGGGGCGGGGGCCGCGGTGGGGGCTACTCGC
AGCAGCGCGGCGGTGGCGGTGGCGGTGGCCAGTCCCAGGGCGGCGGTTACGACGACTACGGCGCGCCTCCCATGGACGAT
GGCGGTGGCCCCATGGGAGGTGGCCACGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.37

100

0.503
  ssb Glaesserella parasuis strain SC1401

39.683

100

0.424
  ssb Neisseria meningitidis MC58

40.331

100

0.412
  ssb Neisseria gonorrhoeae MS11

40.331

100

0.412

Multiple sequence alignment