Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FZC33_RS33125 Genome accession   NZ_CP043489
Coordinates   5131621..5132112 (+) Length   163 a.a.
NCBI ID   WP_149255008.1    Uniprot ID   A0A5C1WQG3
Organism   Labrys sp. KNU-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5126621..5137112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZC33_RS35515 (FZC33_33100) - 5126922..5127134 (-) 213 WP_187829666.1 phage tail protein -
  FZC33_RS33110 (FZC33_33105) - 5127160..5127753 (-) 594 WP_149255005.1 phage portal protein -
  FZC33_RS35220 - 5128292..5128420 (-) 129 WP_245197435.1 YgdI/YgdR family lipoprotein -
  FZC33_RS33115 (FZC33_33110) - 5128953..5130488 (+) 1536 WP_149255006.1 hypothetical protein -
  FZC33_RS33120 (FZC33_33115) - 5130755..5131189 (-) 435 WP_149255007.1 hypothetical protein -
  FZC33_RS33125 (FZC33_33120) ssb 5131621..5132112 (+) 492 WP_149255008.1 single-stranded DNA-binding protein Machinery gene
  FZC33_RS33130 (FZC33_33125) - 5132250..5132885 (-) 636 WP_149255009.1 MarC family protein -
  FZC33_RS33135 (FZC33_33130) - 5133041..5134747 (+) 1707 WP_149255010.1 lysine--tRNA ligase -
  FZC33_RS33140 (FZC33_33135) secG 5134860..5135261 (+) 402 WP_149255011.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18020.05 Da        Isoelectric Point: 7.0213

>NTDB_id=384546 FZC33_RS33125 WP_149255008.1 5131621..5132112(+) (ssb) [Labrys sp. KNU-23]
MSGSVNKVILVGNLGRDPEVRRLNSGEPVVNLRIATTESWRDKATGERKEKTEWHSVVIFNEGLARIAEQYLKKGAKVYL
EGQLQTRKYNDASGVEKYSTEIVLQRYRGEMTLLDSRGGGGQGEGARDYQGNDFGSSSPMERRPAPAGSSKFSSADMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=384546 FZC33_RS33125 WP_149255008.1 5131621..5132112(+) (ssb) [Labrys sp. KNU-23]
ATGTCGGGCTCGGTGAACAAGGTCATTCTGGTCGGTAATCTCGGCCGCGATCCGGAAGTGCGGCGGCTTAATTCGGGCGA
GCCGGTCGTCAACCTGCGTATCGCCACGACGGAAAGCTGGCGCGACAAGGCCACCGGCGAACGCAAGGAGAAGACCGAGT
GGCACAGCGTGGTCATCTTCAACGAGGGACTGGCGCGCATCGCCGAGCAGTATCTGAAGAAGGGCGCCAAGGTTTATCTC
GAAGGCCAGCTTCAGACCCGCAAATACAATGATGCTTCGGGCGTGGAGAAATATTCCACCGAGATCGTGCTGCAGCGCTA
TCGCGGTGAAATGACCTTGCTGGATTCGCGCGGCGGCGGCGGGCAGGGTGAGGGCGCCCGGGACTATCAGGGCAATGATT
TCGGCTCGTCGAGCCCGATGGAACGCCGTCCGGCACCGGCCGGCTCGAGCAAGTTCTCCTCGGCCGACATGGATGACGAC
ATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1WQG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.133

100

0.521
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.515
  ssb Neisseria meningitidis MC58

43.169

100

0.485
  ssb Neisseria gonorrhoeae MS11

42.222

100

0.466

Multiple sequence alignment