Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FZ025_RS02730 Genome accession   NZ_CP043476
Coordinates   598869..599384 (-) Length   171 a.a.
NCBI ID   WP_046979155.1    Uniprot ID   -
Organism   Xanthomonas hyacinthi strain CFBP 1156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 593869..604384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ025_RS02705 (FZ025_02740) - 594212..595717 (+) 1506 WP_046979159.1 helicase HerA-like domain-containing protein -
  FZ025_RS02710 (FZ025_02745) - 595913..596044 (-) 132 Protein_533 GDP-mannose pyrophosphatase -
  FZ025_RS02715 (FZ025_02750) greB 596234..596740 (-) 507 WP_046979158.1 transcription elongation factor GreB -
  FZ025_RS02720 (FZ025_02755) - 596877..597038 (+) 162 Protein_535 rhomboid family intramembrane serine protease -
  FZ025_RS02725 (FZ025_02760) - 597499..598167 (+) 669 WP_046979156.1 TetR/AcrR family transcriptional regulator -
  FZ025_RS22655 - 598423..598548 (-) 126 WP_280117175.1 hypothetical protein -
  FZ025_RS02730 (FZ025_02765) ssb 598869..599384 (-) 516 WP_046979155.1 single-stranded DNA-binding protein Machinery gene
  FZ025_RS02735 (FZ025_02770) - 599576..600574 (+) 999 WP_046979154.1 polyprenyl synthetase family protein -
  FZ025_RS02740 (FZ025_02775) - 600685..601482 (-) 798 WP_046979153.1 dienelactone hydrolase family protein -
  FZ025_RS02745 (FZ025_02780) murD 601571..603004 (-) 1434 WP_104558920.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  FZ025_RS02750 (FZ025_02785) murL 602985..604355 (-) 1371 WP_104558921.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18469.42 Da        Isoelectric Point: 5.3242

>NTDB_id=384411 FZ025_RS02730 WP_046979155.1 598869..599384(-) (ssb) [Xanthomonas hyacinthi strain CFBP 1156]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGGAGMGGDRPQRAAAPRQERPNQGGGGQDYAPRRQQPAPPQSAP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=384411 FZ025_RS02730 WP_046979155.1 598869..599384(-) (ssb) [Xanthomonas hyacinthi strain CFBP 1156]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGATGAGATGCAGAT
GCTCGGCGGCCGCGAAGGCGGCGGCGGCGGCGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCGGCCGCACCGCGCC
AGGAACGCCCGAACCAGGGCGGCGGCGGGCAGGACTACGCGCCGCGCCGCCAGCAGCCGGCGCCGCCGCAGTCCGCGCCG
ATGGACGATTTCGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.491
  ssb Vibrio cholerae strain A1552

45.355

100

0.485
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.48
  ssb Neisseria meningitidis MC58

44.571

100

0.456

Multiple sequence alignment