Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FZ921_RS00840 Genome accession   NZ_CP043458
Coordinates   178636..179766 (-) Length   376 a.a.
NCBI ID   WP_002019199.1    Uniprot ID   A0A9P3CX21
Organism   Acinetobacter baumannii strain 18WIARLN0024     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 173636..184766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ921_RS00815 (FZ921_00810) - 173811..174575 (-) 765 WP_000786957.1 AraC family transcriptional regulator -
  FZ921_RS00820 (FZ921_00815) - 174597..175811 (-) 1215 WP_000372839.1 MFS transporter -
  FZ921_RS00825 (FZ921_00820) - 175948..176598 (+) 651 WP_086227614.1 TetR/AcrR family transcriptional regulator -
  FZ921_RS00830 (FZ921_00825) - 176704..177624 (+) 921 WP_086227613.1 DMT family transporter -
  FZ921_RS00835 (FZ921_00830) - 178016..178585 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  FZ921_RS00840 (FZ921_00835) dprA 178636..179766 (-) 1131 WP_002019199.1 DNA-processing protein DprA Machinery gene
  FZ921_RS00845 (FZ921_00840) tsaP 179787..180941 (-) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FZ921_RS00850 (FZ921_00845) def 181064..181594 (+) 531 WP_001196539.1 peptide deformylase -
  FZ921_RS00855 (FZ921_00850) - 181631..182059 (+) 429 WP_000231981.1 DUF2946 family protein -
  FZ921_RS00860 (FZ921_00855) - 182131..184245 (+) 2115 WP_001120665.1 TonB-dependent copper receptor -
  FZ921_RS00865 (FZ921_00860) - 184299..184505 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41958.53 Da        Isoelectric Point: 6.6659

>NTDB_id=384240 FZ921_RS00840 WP_002019199.1 178636..179766(-) (dprA) [Acinetobacter baumannii strain 18WIARLN0024]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQSQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAKNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLIVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=384240 FZ921_RS00840 WP_002019199.1 178636..179766(-) (dprA) [Acinetobacter baumannii strain 18WIARLN0024]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAAGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTAGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTAAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGGAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTATAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.936

100

0.989

  dprA Acinetobacter baumannii D1279779

98.138

100

0.981

  dprA Acinetobacter baylyi ADP1

70.079

100

0.71

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment