Detailed information NTG0038421

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FBAL_RS01905
• Genome accession: NC_014541
• Coordinates: 395645..396526 (-)
• Length: 293 a.a.
• NCBI ID: WP_013343881.1
• Uniprot ID: E1SN76
• Organism: Ferrimonas balearica DSM 9799
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390645..401526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FBAL_RS01880 (Fbal_0356)	mutT	392064..392453 (+)	390	WP_041251134.1	8-oxo-dGTP diphosphatase MutT	-
FBAL_RS01885 (Fbal_0357)	-	392380..394071 (-)	1692	WP_013343877.1	Wzy polymerase domain-containing protein	-
FBAL_RS01890 (Fbal_0358)	yacG	394071..394295 (-)	225	WP_013343878.1	DNA gyrase inhibitor YacG	-
FBAL_RS01895 (Fbal_0359)	-	394292..395041 (-)	750	WP_013343879.1	cell division protein ZapD	-
FBAL_RS01900 (Fbal_0360)	coaE	395025..395648 (-)	624	WP_013343880.1	dephospho-CoA kinase	-
FBAL_RS01905 (Fbal_0361)	pilD	395645..396526 (-)	882	WP_013343881.1	A24 family peptidase	Machinery gene
FBAL_RS01910 (Fbal_0362)	pilC	396563..397822 (-)	1260	WP_013343882.1	type II secretion system F family protein	Machinery gene
FBAL_RS01915 (Fbal_0363)	pilB	397839..399401 (-)	1563	WP_013343883.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FBAL_RS01920 (Fbal_0364)	-	399475..399903 (-)	429	WP_013343884.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FBAL_RS01925 (Fbal_0365)	nadC	400171..401028 (-)	858	WP_013343885.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32288.64 Da
• Isoelectric Point: 7.0813

>NTDB_id=38421 FBAL_RS01905 WP_013343881.1 395645..396526(-) (pilD) [Ferrimonas balearica DSM 9799]
MTHWIALFDQLPWLFLLLTTALGLILGSFLNVVIHRMPLMMEREWQQECAEALSMPAPASELPDRFNLMVPGSACPRCGT
AIPIWHNIPVLSYLLLRGRCHHCKTPISLRYPTVELLTGLATLFLAWHFGPSAQFLAAWVLTLGLISLAAIDFDTMLLPD
QLTLPLLWLGLLVNLNGLFVPLEQAVIGAALGYLSLWSLFQLFKLLTGKEGMGYGDFKLLALFGAWFGYPALLPVILIAS
IGGAVVGITLQVSGKLGRGKPMPFGPWIVLGGWIYLVWGTDIVNWYLHTVVGV

Nucleotide

• Length: 882 bp

>NTDB_id=38421 FBAL_RS01905 WP_013343881.1 395645..396526(-) (pilD) [Ferrimonas balearica DSM 9799]
ATGACGCACTGGATCGCGCTGTTTGACCAGCTTCCCTGGTTATTTCTGCTTCTCACCACCGCCCTGGGTTTGATCCTGGG
CAGTTTCCTCAATGTGGTGATCCACCGGATGCCGCTGATGATGGAGCGGGAGTGGCAACAGGAGTGTGCCGAGGCGCTCT
CGATGCCCGCCCCCGCCTCAGAACTGCCAGACCGCTTTAACCTGATGGTGCCCGGCTCCGCCTGCCCCCGTTGCGGTACC
GCGATTCCGATCTGGCACAATATTCCGGTGCTGAGCTACCTGCTGCTGCGGGGGCGCTGCCACCACTGTAAAACCCCCAT
CTCCCTGCGCTACCCCACCGTAGAGCTGCTGACCGGTCTCGCCACTTTGTTTCTGGCCTGGCACTTTGGCCCCAGTGCCC
AGTTCCTGGCCGCCTGGGTGCTGACCCTGGGGCTGATCAGCCTCGCTGCCATCGATTTCGACACCATGCTGCTGCCGGAC
CAACTGACCCTGCCTCTGCTGTGGCTGGGCCTGCTGGTGAACCTCAATGGCCTGTTTGTGCCCCTTGAGCAAGCCGTTAT
CGGCGCGGCCCTGGGCTACCTGTCGCTGTGGTCCCTGTTCCAGCTGTTTAAGCTGCTGACCGGCAAAGAGGGGATGGGCT
ACGGCGACTTTAAACTGCTGGCGCTGTTTGGTGCCTGGTTCGGCTACCCCGCCCTGCTGCCGGTGATCCTGATCGCCTCA
ATAGGCGGCGCGGTGGTCGGTATCACCCTGCAGGTCTCCGGCAAGCTGGGCCGGGGCAAACCGATGCCCTTTGGCCCCTG
GATTGTGCTGGGTGGCTGGATCTATCTGGTCTGGGGCACCGACATCGTGAACTGGTATCTGCACACCGTGGTGGGCGTAT
GA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

3D structure

• AlphaFold DB: E1SN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.89	99.317	0.515
pilD	Vibrio cholerae strain A1552	51.724	98.976	0.512
pilD	Acinetobacter baumannii D1279779	47.751	98.635	0.471
pilD	Neisseria gonorrhoeae MS11	50.549	93.174	0.471
pilD	Acinetobacter nosocomialis M2	47.059	98.635	0.464