Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FBAL_RS01910 Genome accession   NC_014541
Coordinates   396563..397822 (-) Length   419 a.a.
NCBI ID   WP_013343882.1    Uniprot ID   E1SN77
Organism   Ferrimonas balearica DSM 9799     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391563..402822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBAL_RS01880 (Fbal_0356) mutT 392064..392453 (+) 390 WP_041251134.1 8-oxo-dGTP diphosphatase MutT -
  FBAL_RS01885 (Fbal_0357) - 392380..394071 (-) 1692 WP_013343877.1 Wzy polymerase domain-containing protein -
  FBAL_RS01890 (Fbal_0358) yacG 394071..394295 (-) 225 WP_013343878.1 DNA gyrase inhibitor YacG -
  FBAL_RS01895 (Fbal_0359) - 394292..395041 (-) 750 WP_013343879.1 cell division protein ZapD -
  FBAL_RS01900 (Fbal_0360) coaE 395025..395648 (-) 624 WP_013343880.1 dephospho-CoA kinase -
  FBAL_RS01905 (Fbal_0361) pilD 395645..396526 (-) 882 WP_013343881.1 A24 family peptidase Machinery gene
  FBAL_RS01910 (Fbal_0362) pilC 396563..397822 (-) 1260 WP_013343882.1 type II secretion system F family protein Machinery gene
  FBAL_RS01915 (Fbal_0363) pilB 397839..399401 (-) 1563 WP_013343883.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FBAL_RS01920 (Fbal_0364) - 399475..399903 (-) 429 WP_013343884.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FBAL_RS01925 (Fbal_0365) nadC 400171..401028 (-) 858 WP_013343885.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FBAL_RS01930 (Fbal_0366) - 401035..401550 (-) 516 WP_013343886.1 TIGR02281 family clan AA aspartic protease -
  FBAL_RS01935 (Fbal_0367) ampD 401620..402222 (+) 603 WP_013343887.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45869.11 Da        Isoelectric Point: 9.8815

>NTDB_id=38422 FBAL_RS01910 WP_013343882.1 396563..397822(-) (pilC) [Ferrimonas balearica DSM 9799]
MAIAAKKRLKTSEPDKPALDVRTYLWKGKNSKGNSVKGELSGQTTAEVKVLLRKQGITPLSVKKKPKALFERKAKIRGMD
IAVVTRQIATMLLAGVPLVTAIEMVGRSHENDAVRKLLAIILAEVQSGTPLSKALRPHRQYFDDLYCDLVAAGEHSGTLD
QVFDRIATYREKSEALKSKIKKAMFYPTAVVVVAISVTVLLLLFVVPQFEAIFNDFGAELPIFTQIVINLSRFLSESWYY
FLAAIVIVIWLFIRSHRNSQKFRDKVDHFLLKIPVVGPILDKAAVARFSRTLATTFAAGVPLVDGLDSASGASGNALYRD
AVMKIKEEVIAGLQMNVAMRTTGLFPDMLIQMVMIGEESGALDDMLNKVASIYEAQVDDAVDGLSTLIEPIMMVVIGGLV
GGLVVAMYLPIFQLGNVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=38422 FBAL_RS01910 WP_013343882.1 396563..397822(-) (pilC) [Ferrimonas balearica DSM 9799]
ATGGCCATTGCTGCAAAGAAACGCCTGAAAACCTCCGAGCCGGACAAACCCGCTCTGGATGTCCGGACCTATCTGTGGAA
AGGCAAAAACAGCAAGGGCAACTCGGTAAAAGGCGAACTGAGTGGCCAAACCACCGCCGAAGTAAAAGTACTGCTGCGTA
AGCAGGGCATTACGCCGTTAAGCGTAAAGAAAAAGCCCAAAGCCCTGTTTGAGCGTAAAGCCAAGATCCGCGGTATGGAC
ATTGCTGTGGTGACCCGCCAGATCGCCACCATGTTGTTGGCCGGTGTACCACTGGTGACTGCCATTGAGATGGTGGGGCG
CAGTCATGAGAATGACGCCGTCCGCAAATTGCTGGCGATCATTCTGGCCGAGGTGCAATCCGGTACGCCGCTGTCCAAAG
CTCTGCGCCCCCATCGGCAGTATTTTGATGATCTGTACTGCGATCTGGTCGCCGCCGGTGAGCACTCCGGTACCCTGGAT
CAAGTATTTGATCGCATCGCCACCTACCGGGAAAAATCGGAAGCGCTGAAATCCAAAATTAAAAAGGCGATGTTTTACCC
CACGGCGGTGGTCGTTGTCGCGATCAGTGTAACTGTCCTTTTGCTGCTGTTTGTGGTGCCACAGTTTGAAGCCATCTTTA
ATGACTTCGGTGCTGAGCTGCCCATCTTTACCCAGATCGTGATTAATCTGTCCCGCTTCCTGTCGGAGTCCTGGTACTAC
TTTTTGGCTGCCATTGTGATTGTGATATGGCTGTTTATCCGCAGCCACCGAAACTCACAGAAGTTTCGGGATAAAGTTGA
CCACTTCCTGTTAAAAATCCCGGTTGTCGGACCGATTCTGGATAAAGCCGCCGTGGCCCGCTTCTCCCGTACCCTGGCCA
CCACCTTTGCCGCCGGTGTGCCCTTGGTTGATGGATTAGACTCCGCCTCCGGTGCGTCCGGTAATGCCCTCTACCGGGAT
GCGGTGATGAAGATCAAAGAGGAGGTGATCGCCGGTCTGCAGATGAATGTGGCGATGCGCACCACCGGGCTGTTCCCCGA
TATGCTCATACAGATGGTGATGATTGGCGAGGAGTCCGGTGCCCTGGACGATATGCTCAATAAAGTCGCCAGTATCTATG
AAGCCCAGGTGGACGACGCGGTGGATGGCCTCTCCACCCTGATTGAGCCCATTATGATGGTGGTAATTGGTGGCTTGGTG
GGCGGTTTGGTGGTGGCGATGTACCTGCCGATCTTCCAATTGGGCAATGTGGTCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E1SN77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.335

96.181

0.532
  pilC Acinetobacter baumannii D1279779

52.261

94.988

0.496
  pilC Acinetobacter baylyi ADP1

51.889

94.749

0.492
  pilC Legionella pneumophila strain ERS1305867

50.37

96.659

0.487
  pilC Vibrio cholerae strain A1552

47.264

95.943

0.453
  pilC Vibrio campbellii strain DS40M4

46.667

96.659

0.451
  pilG Neisseria gonorrhoeae MS11

44.724

94.988

0.425
  pilG Neisseria meningitidis 44/76-A

44.472

94.988

0.422

Multiple sequence alignment