Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   BSR23_RS04365 Genome accession   NZ_CP043421
Coordinates   843451..844134 (-) Length   227 a.a.
NCBI ID   WP_077671779.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 844243..868278 843451..844134 flank 109


Gene organization within MGE regions


Location: 843451..868278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS04365 (BSR23_004365) ideA 843451..844134 (-) 684 WP_077671779.1 endonuclease Regulator
  BSR23_RS04370 (BSR23_004370) - 844243..844845 (-) 603 WP_032081055.1 hypothetical protein -
  BSR23_RS04375 (BSR23_004375) - 845213..845539 (+) 327 WP_077671780.1 plasmid-related protein -
  BSR23_RS04380 (BSR23_004380) - 845555..845974 (+) 420 WP_040132793.1 single-stranded DNA-binding protein -
  BSR23_RS04385 (BSR23_004385) bet 846054..846872 (+) 819 WP_000414662.1 phage recombination protein Bet -
  BSR23_RS26765 - 846954..847097 (+) 144 WP_169674712.1 hypothetical protein -
  BSR23_RS04390 (BSR23_004390) - 847159..848175 (+) 1017 WP_077671781.1 YqaJ viral recombinase family protein -
  BSR23_RS04395 (BSR23_004395) - 848385..849344 (+) 960 WP_001959209.1 AAA family ATPase -
  BSR23_RS04400 (BSR23_004400) - 849344..850111 (+) 768 WP_077671782.1 WGR domain-containing protein -
  BSR23_RS04405 (BSR23_004405) - 850210..851163 (+) 954 WP_077671783.1 DUF3150 domain-containing protein -
  BSR23_RS04410 (BSR23_004410) - 851225..851665 (+) 441 WP_032469941.1 hypothetical protein -
  BSR23_RS04415 (BSR23_004415) - 851735..853390 (+) 1656 WP_077671784.1 VWA domain-containing protein -
  BSR23_RS04420 (BSR23_004420) radC 853475..853972 (+) 498 WP_077671785.1 DNA repair protein RadC -
  BSR23_RS04425 (BSR23_004425) - 853972..854313 (+) 342 WP_077671786.1 plasmid-related protein -
  BSR23_RS04430 (BSR23_004430) - 854405..855472 (+) 1068 WP_077671787.1 primase-helicase zinc-binding domain-containing protein -
  BSR23_RS04435 (BSR23_004435) - 855562..856269 (+) 708 WP_077671788.1 hypothetical protein -
  BSR23_RS04440 (BSR23_004440) - 856632..857696 (+) 1065 WP_077671789.1 hypothetical protein -
  BSR23_RS04445 (BSR23_004445) - 857900..858844 (+) 945 WP_077671790.1 thioredoxin family protein -
  BSR23_RS04450 (BSR23_004450) - 858847..860235 (+) 1389 WP_077671791.1 conjugal transfer protein TraH -
  BSR23_RS04455 (BSR23_004455) - 860239..863808 (+) 3570 WP_077671792.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  BSR23_RS04460 (BSR23_004460) eexS 863841..864272 (-) 432 WP_077671793.1 entry exclusion protein EexS -
  BSR23_RS04465 (BSR23_004465) - 864327..864860 (-) 534 WP_024008816.1 FlhC family transcriptional regulator -
  BSR23_RS04470 (BSR23_004470) - 864857..865156 (-) 300 WP_000210563.1 flagellar transcriptional regulator FlhD -
  BSR23_RS04475 (BSR23_004475) - 865153..865701 (-) 549 WP_025610846.1 lytic transglycosylase domain-containing protein -
  BSR23_RS04480 (BSR23_004480) - 865688..866350 (-) 663 WP_007105460.1 DUF6475 domain-containing protein -
  BSR23_RS04485 (BSR23_004485) - 866337..867206 (-) 870 WP_077671794.1 hypothetical protein -
  BSR23_RS04490 (BSR23_004490) - 867262..867513 (-) 252 WP_000451746.1 helix-turn-helix domain-containing protein -
  BSR23_RS04495 (BSR23_004495) - 867631..868278 (+) 648 WP_000854920.1 LexA family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26505.62 Da        Isoelectric Point: 7.1838

>NTDB_id=383924 BSR23_RS04365 WP_077671779.1 843451..844134(-) (ideA) [Vibrio parahaemolyticus strain MVP1]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKSILGKSNCYVSDSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=383924 BSR23_RS04365 WP_077671779.1 843451..844134(-) (ideA) [Vibrio parahaemolyticus strain MVP1]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
GTATTCTAGGTAAATCAAATTGCTATGTATCAGATAGCTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

95.154

100

0.952
  dns Aliivibrio fischeri ES114

50.87

100

0.515
  dns Vibrio parahaemolyticus RIMD 2210633

51.092

100

0.515
  dns Vibrio cholerae strain A1552

50.667

99.119

0.502
  dns Campylobacter jejuni RM1221

37.778

99.119

0.374

Multiple sequence alignment