Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   HC659_RS13970 Genome accession   NZ_CP051465
Coordinates   2702450..2703145 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain UCMB5121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2697450..2708145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC659_RS13945 (HC659_27480) minD 2698386..2699192 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  HC659_RS13950 (HC659_27490) minC 2699194..2699874 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  HC659_RS13955 (HC659_27500) mreD 2699927..2700445 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  HC659_RS13960 (HC659_27510) mreC 2700442..2701314 (-) 873 WP_032677108.1 rod shape-determining protein MreC -
  HC659_RS13965 (HC659_27520) mreB 2701345..2702358 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  HC659_RS13970 (HC659_27530) ysxA/radC 2702450..2703145 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  HC659_RS13975 (HC659_27540) maf 2703182..2703751 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  HC659_RS13980 (HC659_27550) spoIIB 2703904..2704902 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  HC659_RS13985 (HC659_27560) comC 2705036..2705782 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  HC659_RS13990 (HC659_27570) folC 2705925..2707217 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=383763 HC659_RS13970 WP_015251546.1 2702450..2703145(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=383763 HC659_RS13970 WP_015251546.1 2702450..2703145(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain UCMB5121]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment