Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FY406_RS08265 Genome accession   NZ_CP043405
Coordinates   1654217..1656019 (+) Length   600 a.a.
NCBI ID   WP_003088067.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649217..1661019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08235 (FY406_08235) - 1649263..1650051 (+) 789 WP_003088053.1 ABC transporter permease subunit -
  FY406_RS10480 - 1650547..1650753 (-) 207 Protein_1573 DUF3021 domain-containing protein -
  FY406_RS08240 (FY406_08240) queF 1650833..1651321 (-) 489 WP_003088057.1 preQ(1) synthase -
  FY406_RS08245 (FY406_08245) queE 1651335..1652051 (-) 717 WP_003088059.1 7-carboxy-7-deazaguanine synthase QueE -
  FY406_RS08250 (FY406_08250) queD 1652048..1652494 (-) 447 WP_003088062.1 6-carboxytetrahydropterin synthase QueD -
  FY406_RS08255 (FY406_08255) queC 1652494..1653147 (-) 654 WP_003088064.1 7-cyano-7-deazaguanine synthase QueC -
  FY406_RS08260 (FY406_08260) rcrR 1653779..1654207 (+) 429 WP_003088066.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FY406_RS08265 (FY406_08265) rcrP 1654217..1656019 (+) 1803 WP_003088067.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08270 (FY406_08270) rcrQ 1656009..1657769 (+) 1761 WP_003088069.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08275 (FY406_08275) tpx 1657943..1658437 (+) 495 WP_003088071.1 thiol peroxidase -
  FY406_RS08285 (FY406_08285) cipB 1659172..1659402 (+) 231 WP_003088075.1 Blp family class II bacteriocin Regulator
  FY406_RS08290 (FY406_08290) - 1659526..1659951 (+) 426 WP_003088076.1 hypothetical protein -
  FY406_RS08295 (FY406_08295) - 1660174..1660797 (+) 624 WP_003088077.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67085.03 Da        Isoelectric Point: 9.7939

>NTDB_id=383593 FY406_RS08265 WP_003088067.1 1654217..1656019(+) (rcrP) [Streptococcus ratti strain ATCC 31377]
MFKIFKRLNAKEWGMILLSTAFICLAVWMDLKTPEYMSDITTLLQTKGTTASDIMKPGSKMLIFSFGSFLMAVFVGFLAA
RTAAGFTTRLRSDIFNQVMDYSDAEIKKFSIPSLLTRTTNDLTQLQIMITMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVLILLSVLMFVAFPRQRKVQGLTDALNSTTRESLSGVRVVRAYNAEDYQENKFKEENKNLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLIDDISIPRTSMTAAAAAVKDRITVFSDMVVFSSYAMQIVIGFMMMVAIFIILPRALV
SAKRINEVLALESSIQFKKTSKKTNGQKGEIEFHDVSFRYNKNSRAVIEHISFKAKAGETVAFIGSTGSGKSTLINLIPR
FYDATEGWIKVDGVKIQDYSHDDLNKKVGYIPQKAVLFSGTIRSNMEFGESSQTPLDDAKIWEALELAQAKDFVENKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRAELRKKTRDMTKLIVAQRISTIMNADQIL
VLDQGKVVGQGTHKELLANNEIYQEIAYSQLSKEELENGQ

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=383593 FY406_RS08265 WP_003088067.1 1654217..1656019(+) (rcrP) [Streptococcus ratti strain ATCC 31377]
ATGTTTAAGATATTTAAACGATTAAATGCCAAAGAATGGGGTATGATTCTCCTTAGTACAGCTTTTATTTGCTTAGCTGT
TTGGATGGATTTAAAAACACCAGAGTATATGTCTGATATTACGACCTTGCTGCAAACCAAGGGAACTACTGCTTCAGATA
TTATGAAGCCGGGGTCTAAAATGCTCATATTCTCCTTTGGCAGTTTTTTGATGGCAGTTTTCGTTGGTTTTTTAGCAGCA
AGAACAGCTGCCGGTTTTACAACACGCCTGCGTTCGGACATTTTCAATCAGGTGATGGATTATTCGGATGCTGAAATCAA
GAAATTTTCCATTCCTAGTCTTTTGACGCGAACCACCAACGATCTGACCCAGCTGCAGATAATGATTACCATGGGGATGC
AGGTAGTGACCCGCGGTCCTATTATGGCTGTTTGGGCACTGACTAAAATTTGGGGCAAGAGTGATGAGTGGACCGGTGCA
GTCGGAGTAGCTGTGCTTATTGTTTTGATTTTGCTGTCTGTCTTAATGTTTGTTGCTTTTCCAAGACAGCGCAAGGTACA
AGGCCTGACAGATGCCCTTAACTCAACGACGCGTGAATCTTTGAGCGGTGTTCGTGTTGTACGTGCCTACAATGCAGAAG
ATTATCAGGAAAATAAATTTAAGGAAGAAAATAAAAATCTGACCAAACTAAATTTATTTGTCTACCGTCTCATGTCACTG
ATGAATCCGGTCATGACAGTCGTTTCAAGCGGTCTGACACTGGCTATCTATTGGATTGGTTCTTATTTGATTGATGATAT
TAGCATTCCAAGGACCAGTATGACTGCGGCGGCAGCAGCAGTTAAGGATCGGATCACTGTTTTCAGCGATATGGTTGTTT
TCTCATCTTATGCCATGCAGATTGTCATCGGCTTTATGATGATGGTTGCTATCTTCATTATTTTGCCGCGTGCCCTTGTC
TCTGCCAAGCGGATCAACGAAGTCCTGGCACTTGAGTCATCGATACAGTTCAAGAAAACTTCTAAGAAAACTAACGGTCA
AAAAGGGGAAATTGAATTTCACGATGTTTCTTTCCGTTACAACAAGAATTCCCGCGCTGTGATAGAGCATATTTCTTTTA
AAGCAAAAGCCGGCGAAACGGTTGCTTTTATTGGTTCGACAGGTTCCGGAAAATCAACTTTGATCAATCTGATTCCGCGT
TTTTACGATGCTACAGAGGGCTGGATTAAGGTTGACGGTGTTAAGATTCAGGATTACAGCCACGATGATTTAAATAAGAA
AGTCGGCTATATTCCGCAAAAAGCAGTGCTTTTTAGTGGCACCATTCGCTCAAATATGGAATTTGGCGAAAGCAGCCAAA
CACCGCTGGATGATGCTAAAATTTGGGAGGCGCTTGAACTGGCTCAGGCTAAAGATTTTGTCGAAAATAAGGAAAAAGGA
CTTGATACAGAAGTAGCACAGGGCGGAACTAATTTTTCCGGCGGACAGAAACAGCGCTTGGCAATTGCGCGTGCTCTTGC
CCGCAAACCTGAGATTCTTATTTTTGATGATTCCTTCTCAGCACTTGATTATAAGACCGATAGAATTCTGCGTGCTGAGC
TGAGGAAGAAAACTAGGGATATGACTAAATTAATCGTTGCTCAGCGAATTTCAACCATTATGAATGCCGATCAAATTTTA
GTTTTAGATCAAGGGAAGGTTGTCGGTCAGGGAACTCATAAAGAGCTCTTGGCTAATAATGAGATTTATCAGGAAATTGC
TTATTCACAATTATCTAAGGAGGAGTTAGAAAATGGACAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

88.667

100

0.887

Multiple sequence alignment