Detailed information
Bioinformatically predicted
Overview
| Name | rcrR | Type | Regulator |
| Locus tag | FY406_RS08260 | Genome accession | NZ_CP043405 |
| Coordinates | 1653779..1654207 (+) | Length | 142 a.a. |
| NCBI ID | WP_003088066.1 | Uniprot ID | - |
| Organism | Streptococcus ratti strain ATCC 31377 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1632276..1657769 | 1653779..1654207 | within | 0 |
Gene organization within MGE regions
Location: 1632276..1657769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY406_RS08175 (FY406_08175) | - | 1632276..1633490 (+) | 1215 | WP_003088026.1 | CCA tRNA nucleotidyltransferase | - |
| FY406_RS08180 (FY406_08180) | - | 1633483..1635351 (+) | 1869 | WP_003088028.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| FY406_RS08185 (FY406_08185) | - | 1635351..1635824 (+) | 474 | WP_003088029.1 | GNAT family N-acetyltransferase | - |
| FY406_RS08190 (FY406_08190) | - | 1635840..1637576 (+) | 1737 | WP_003088031.1 | ABC transporter ATP-binding protein | - |
| FY406_RS08195 (FY406_08195) | - | 1637585..1639360 (+) | 1776 | WP_003088033.1 | ABC transporter ATP-binding protein | - |
| FY406_RS08200 (FY406_08200) | - | 1639469..1640389 (+) | 921 | WP_003088035.1 | AEC family transporter | - |
| FY406_RS08205 (FY406_08205) | - | 1640573..1644898 (+) | 4326 | Protein_1566 | glycoside hydrolase family 70 protein | - |
| FY406_RS08210 (FY406_08210) | - | 1645221..1645727 (-) | 507 | WP_003088039.1 | HdeD family acid-resistance protein | - |
| FY406_RS08215 (FY406_08215) | gdhA | 1646011..1647360 (+) | 1350 | WP_003088041.1 | NADP-specific glutamate dehydrogenase | - |
| FY406_RS08220 (FY406_08220) | - | 1647536..1647988 (+) | 453 | WP_003088043.1 | LytTR family DNA-binding domain-containing protein | - |
| FY406_RS08225 (FY406_08225) | - | 1647978..1648418 (+) | 441 | WP_003088045.1 | hypothetical protein | - |
| FY406_RS08230 (FY406_08230) | - | 1648428..1649255 (+) | 828 | WP_003088046.1 | ABC transporter ATP-binding protein | - |
| FY406_RS08235 (FY406_08235) | - | 1649263..1650051 (+) | 789 | WP_003088053.1 | ABC transporter permease subunit | - |
| FY406_RS10480 | - | 1650547..1650753 (-) | 207 | Protein_1573 | DUF3021 domain-containing protein | - |
| FY406_RS08240 (FY406_08240) | queF | 1650833..1651321 (-) | 489 | WP_003088057.1 | preQ(1) synthase | - |
| FY406_RS08245 (FY406_08245) | queE | 1651335..1652051 (-) | 717 | WP_003088059.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| FY406_RS08250 (FY406_08250) | queD | 1652048..1652494 (-) | 447 | WP_003088062.1 | 6-carboxytetrahydropterin synthase QueD | - |
| FY406_RS08255 (FY406_08255) | queC | 1652494..1653147 (-) | 654 | WP_003088064.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| FY406_RS08260 (FY406_08260) | rcrR | 1653779..1654207 (+) | 429 | WP_003088066.1 | MarR family winged helix-turn-helix transcriptional regulator | Regulator |
| FY406_RS08265 (FY406_08265) | rcrP | 1654217..1656019 (+) | 1803 | WP_003088067.1 | ABC transporter ATP-binding protein | Regulator |
| FY406_RS08270 (FY406_08270) | rcrQ | 1656009..1657769 (+) | 1761 | WP_003088069.1 | ABC transporter ATP-binding protein | Regulator |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16425.07 Da Isoelectric Point: 9.8176
>NTDB_id=383592 FY406_RS08260 WP_003088066.1 1653779..1654207(+) (rcrR) [Streptococcus ratti strain ATCC 31377]
MKEPFDLFRDFINTVETTVQELAKENNIEHLGGPQGHTVSYLFKNQDKEIFIKDIEERLHISKSVASNLIKRMEKNGFIS
IIPSQKDKRCKQIILTPLGLNKAGDIITFHKKIHEQLLKGIDKADLVTARRVFEQIKQNLEK
MKEPFDLFRDFINTVETTVQELAKENNIEHLGGPQGHTVSYLFKNQDKEIFIKDIEERLHISKSVASNLIKRMEKNGFIS
IIPSQKDKRCKQIILTPLGLNKAGDIITFHKKIHEQLLKGIDKADLVTARRVFEQIKQNLEK
Nucleotide
Download Length: 429 bp
>NTDB_id=383592 FY406_RS08260 WP_003088066.1 1653779..1654207(+) (rcrR) [Streptococcus ratti strain ATCC 31377]
ATGAAAGAGCCTTTCGATTTGTTTAGAGATTTTATCAATACAGTGGAAACAACAGTCCAGGAGTTGGCTAAAGAAAATAA
CATTGAACATTTGGGAGGGCCTCAGGGACATACAGTTAGTTATCTTTTTAAGAATCAAGATAAAGAAATTTTTATTAAGG
ATATTGAGGAAAGACTGCACATTTCAAAGTCAGTTGCCAGCAATCTCATCAAGAGAATGGAGAAAAACGGCTTTATTTCC
ATCATTCCCTCTCAAAAAGATAAGCGCTGCAAACAAATTATTTTGACACCTTTAGGCCTTAATAAGGCAGGGGACATTAT
CACCTTTCATAAAAAAATCCATGAGCAGCTGCTGAAAGGTATTGATAAAGCAGATCTTGTGACTGCTCGCAGGGTTTTTG
AACAAATTAAACAAAATTTAGAAAAATAG
ATGAAAGAGCCTTTCGATTTGTTTAGAGATTTTATCAATACAGTGGAAACAACAGTCCAGGAGTTGGCTAAAGAAAATAA
CATTGAACATTTGGGAGGGCCTCAGGGACATACAGTTAGTTATCTTTTTAAGAATCAAGATAAAGAAATTTTTATTAAGG
ATATTGAGGAAAGACTGCACATTTCAAAGTCAGTTGCCAGCAATCTCATCAAGAGAATGGAGAAAAACGGCTTTATTTCC
ATCATTCCCTCTCAAAAAGATAAGCGCTGCAAACAAATTATTTTGACACCTTTAGGCCTTAATAAGGCAGGGGACATTAT
CACCTTTCATAAAAAAATCCATGAGCAGCTGCTGAAAGGTATTGATAAAGCAGATCTTGTGACTGCTCGCAGGGTTTTTG
AACAAATTAAACAAAATTTAGAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrR | Streptococcus mutans UA159 |
64.085 |
100 |
0.641 |