Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FY406_RS08270 Genome accession   NZ_CP043405
Coordinates   1656009..1657769 (+) Length   586 a.a.
NCBI ID   WP_003088069.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1632276..1657769 1656009..1657769 within 0


Gene organization within MGE regions


Location: 1632276..1657769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08175 (FY406_08175) - 1632276..1633490 (+) 1215 WP_003088026.1 CCA tRNA nucleotidyltransferase -
  FY406_RS08180 (FY406_08180) - 1633483..1635351 (+) 1869 WP_003088028.1 ABC-F family ATP-binding cassette domain-containing protein -
  FY406_RS08185 (FY406_08185) - 1635351..1635824 (+) 474 WP_003088029.1 GNAT family N-acetyltransferase -
  FY406_RS08190 (FY406_08190) - 1635840..1637576 (+) 1737 WP_003088031.1 ABC transporter ATP-binding protein -
  FY406_RS08195 (FY406_08195) - 1637585..1639360 (+) 1776 WP_003088033.1 ABC transporter ATP-binding protein -
  FY406_RS08200 (FY406_08200) - 1639469..1640389 (+) 921 WP_003088035.1 AEC family transporter -
  FY406_RS08205 (FY406_08205) - 1640573..1644898 (+) 4326 Protein_1566 glycoside hydrolase family 70 protein -
  FY406_RS08210 (FY406_08210) - 1645221..1645727 (-) 507 WP_003088039.1 HdeD family acid-resistance protein -
  FY406_RS08215 (FY406_08215) gdhA 1646011..1647360 (+) 1350 WP_003088041.1 NADP-specific glutamate dehydrogenase -
  FY406_RS08220 (FY406_08220) - 1647536..1647988 (+) 453 WP_003088043.1 LytTR family DNA-binding domain-containing protein -
  FY406_RS08225 (FY406_08225) - 1647978..1648418 (+) 441 WP_003088045.1 hypothetical protein -
  FY406_RS08230 (FY406_08230) - 1648428..1649255 (+) 828 WP_003088046.1 ABC transporter ATP-binding protein -
  FY406_RS08235 (FY406_08235) - 1649263..1650051 (+) 789 WP_003088053.1 ABC transporter permease subunit -
  FY406_RS10480 - 1650547..1650753 (-) 207 Protein_1573 DUF3021 domain-containing protein -
  FY406_RS08240 (FY406_08240) queF 1650833..1651321 (-) 489 WP_003088057.1 preQ(1) synthase -
  FY406_RS08245 (FY406_08245) queE 1651335..1652051 (-) 717 WP_003088059.1 7-carboxy-7-deazaguanine synthase QueE -
  FY406_RS08250 (FY406_08250) queD 1652048..1652494 (-) 447 WP_003088062.1 6-carboxytetrahydropterin synthase QueD -
  FY406_RS08255 (FY406_08255) queC 1652494..1653147 (-) 654 WP_003088064.1 7-cyano-7-deazaguanine synthase QueC -
  FY406_RS08260 (FY406_08260) rcrR 1653779..1654207 (+) 429 WP_003088066.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FY406_RS08265 (FY406_08265) rcrP 1654217..1656019 (+) 1803 WP_003088067.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08270 (FY406_08270) rcrQ 1656009..1657769 (+) 1761 WP_003088069.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64854.69 Da        Isoelectric Point: 5.9238

>NTDB_id=383594 FY406_RS08270 WP_003088069.1 1656009..1657769(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
MDNKKKSLLSQMAPYLKGYKALFALAVVFTIASSTITVIGPDRLKEMTDTVTKGLAGKIDLDKIAEIAFTLALMYIGGAL
VSYAASFIVSTLIQKFSQRLRNAIAHKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAVVLLIGSIFMM
IKTNGALAATAILSVFAGFALSSIIMVKSQPLFKRQQKNLANVSGYVEEIYSGHNVVSSYNARRQSKEQFEVLNNQLFSS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGARMALNGDVTMGTIVAFMTYVRIFTQPISQIAQGITQLQSANAAMGRVFE
FLNEEEMEAEDHKQRQLDTVKGDVSFDNVFFGYQPDKTIIHDFSAHAKAGQKVAIVGPTGAGKTTIVNLLMRFYEVDKGS
ISIDGVNVHDMKREEVHDAFAMVLQDTWLFEGTVKENLIYNQEHITEEQVIAAAKAVGVHHFIKTLPEGYDTVLDDSVTL
SIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDDLMAQDGFYADLYNSQFTEEDDAA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=383594 FY406_RS08270 WP_003088069.1 1656009..1657769(+) (rcrQ) [Streptococcus ratti strain ATCC 31377]
ATGGACAATAAAAAGAAATCATTATTAAGTCAGATGGCTCCTTATCTTAAAGGGTATAAGGCCTTATTTGCTCTTGCTGT
TGTTTTTACAATTGCTTCAAGTACGATTACGGTTATTGGGCCTGACCGACTTAAGGAAATGACCGATACGGTGACCAAGG
GCCTTGCAGGCAAGATTGATCTGGATAAAATTGCTGAAATTGCCTTTACTCTGGCACTAATGTATATTGGCGGAGCTCTG
GTTTCTTATGCTGCAAGCTTTATTGTATCAACCTTGATTCAAAAATTCTCGCAGCGTCTGCGCAATGCTATTGCCCATAA
AATCAACAAGGTACCGCTTAAGTACTTTGACAGCCACTCACAAGGAGACACCTTATCTCGCGTGACCAATGATGTGGATT
TGATGACCCAATCATTTAACCAAAGTTTGGTTTCAATGGTAGCAGCTGTCGTCCTTTTAATCGGTTCCATTTTTATGATG
ATCAAGACAAACGGCGCTCTGGCCGCAACAGCCATTTTATCTGTCTTTGCAGGTTTTGCTCTGTCAAGCATCATCATGGT
TAAAAGCCAGCCGCTCTTTAAACGTCAGCAAAAGAATCTGGCTAATGTCAGTGGCTATGTTGAAGAGATTTATTCCGGAC
ACAATGTCGTTTCTAGCTATAATGCGCGCCGGCAAAGCAAGGAGCAGTTTGAAGTCTTAAATAACCAGTTGTTTTCTAGT
ATGTGGAAGTCACAGTTCTTCTCTGGAATCATGATGCCCTTGATGCAGTTCATTGGTAATTTTGGCTATGTTATGGTCTG
TATCGTAGGAGCCCGCATGGCGTTAAACGGCGATGTGACTATGGGAACTATCGTTGCTTTCATGACTTATGTCCGCATCT
TTACTCAGCCTATTTCACAAATCGCACAGGGTATCACCCAGCTTCAGTCAGCCAATGCTGCCATGGGGCGCGTTTTTGAA
TTTCTGAATGAAGAAGAGATGGAAGCAGAAGATCACAAGCAAAGACAGCTTGATACCGTTAAAGGAGATGTTAGCTTTGA
CAATGTCTTCTTTGGCTATCAGCCGGATAAAACCATTATCCATGATTTTTCAGCCCATGCAAAAGCCGGACAGAAAGTGG
CTATTGTCGGTCCGACAGGTGCTGGTAAAACAACCATCGTCAATCTGCTGATGCGCTTTTATGAAGTTGATAAGGGCAGC
ATTTCCATCGATGGTGTCAATGTGCACGACATGAAGCGTGAAGAGGTGCATGATGCCTTTGCTATGGTTCTTCAGGATAC
CTGGCTTTTCGAGGGAACTGTTAAGGAAAATCTGATTTACAATCAGGAACACATTACAGAGGAGCAAGTCATTGCAGCAG
CTAAAGCTGTCGGTGTTCACCATTTCATCAAAACACTGCCTGAGGGTTATGATACTGTTTTAGACGATTCGGTAACCTTA
TCCATTGGTCAAAAGCAGCTCTTGACGATTGCGCGGGCTCTGCTCAAAGATTCACCGCTGCTTATTCTTGACGAAGCAAC
ATCATCTGTTGATACCAGAACAGAAGAGCTGATTCAAAAAGCGATGGATAAGCTGATGGAAGGCAGAACCTCCTTCGTCA
TTGCTCACCGCCTCTCAACTATTCGCAATGCGGATCTCATTCTTGTAATGAAAGACGGCAACATTATTGAGCAAGGCAAT
CACGATGATCTTATGGCTCAAGATGGCTTCTATGCTGATCTTTACAACAGCCAGTTCACGGAAGAAGATGACGCAGCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

89.347

99.317

0.887

Multiple sequence alignment