Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   FY406_RS08285 Genome accession   NZ_CP043405
Coordinates   1659172..1659402 (+) Length   76 a.a.
NCBI ID   WP_003088075.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654172..1664402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS08265 (FY406_08265) rcrP 1654217..1656019 (+) 1803 WP_003088067.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08270 (FY406_08270) rcrQ 1656009..1657769 (+) 1761 WP_003088069.1 ABC transporter ATP-binding protein Regulator
  FY406_RS08275 (FY406_08275) tpx 1657943..1658437 (+) 495 WP_003088071.1 thiol peroxidase -
  FY406_RS08285 (FY406_08285) cipB 1659172..1659402 (+) 231 WP_003088075.1 Blp family class II bacteriocin Regulator
  FY406_RS08290 (FY406_08290) - 1659526..1659951 (+) 426 WP_003088076.1 hypothetical protein -
  FY406_RS08295 (FY406_08295) - 1660174..1660797 (+) 624 WP_003088077.1 GTP pyrophosphokinase family protein -
  FY406_RS08300 (FY406_08300) - 1660799..1661500 (+) 702 WP_003088078.1 response regulator transcription factor -
  FY406_RS08305 (FY406_08305) - 1661490..1662725 (+) 1236 WP_174267028.1 HAMP domain-containing sensor histidine kinase -
  FY406_RS08310 (FY406_08310) - 1663070..1663420 (-) 351 WP_003088080.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7399.27 Da        Isoelectric Point: 3.5600

>NTDB_id=383595 FY406_RS08285 WP_003088075.1 1659172..1659402(+) (cipB) [Streptococcus ratti strain ATCC 31377]
MNTQVFEQFEVMDNEALSTVEGGGRGWDCAAGIALGAGQGYMTTAGGTAFLGPYAIGTGVFGALIGGAGGAMTSCG

Nucleotide


Download         Length: 231 bp        

>NTDB_id=383595 FY406_RS08285 WP_003088075.1 1659172..1659402(+) (cipB) [Streptococcus ratti strain ATCC 31377]
ATGAATACACAAGTATTTGAACAATTTGAAGTAATGGACAATGAAGCACTTTCAACTGTTGAAGGTGGAGGCCGTGGATG
GGACTGTGCAGCTGGCATTGCACTAGGTGCCGGCCAAGGTTACATGACTACCGCGGGAGGAACGGCATTTCTTGGGCCAT
ACGCTATTGGTACCGGGGTCTTTGGCGCTTTAATTGGAGGTGCCGGAGGAGCAATGACTTCCTGCGGTTAA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

85.526

100

0.855

Multiple sequence alignment