Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   FY406_RS00055 Genome accession   NZ_CP043405
Coordinates   13908..14711 (-) Length   267 a.a.
NCBI ID   WP_003088924.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8908..19711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS00040 (FY406_00040) rnc 12433..13128 (-) 696 WP_003088921.1 ribonuclease III -
  FY406_RS00050 (FY406_00050) - 13574..13845 (-) 272 Protein_8 DUF454 family protein -
  FY406_RS00055 (FY406_00055) vicX 13908..14711 (-) 804 WP_003088924.1 MBL fold metallo-hydrolase Regulator
  FY406_RS00060 (FY406_00060) vicK 14708..16060 (-) 1353 WP_003088926.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FY406_RS00065 (FY406_00065) vicR 16053..16760 (-) 708 WP_003088928.1 response regulator YycF Regulator
  FY406_RS00070 (FY406_00070) - 17110..17886 (+) 777 WP_003088930.1 amino acid ABC transporter ATP-binding protein -
  FY406_RS00075 (FY406_00075) - 17907..18722 (+) 816 WP_003088931.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29842.03 Da        Isoelectric Point: 6.2798

>NTDB_id=383538 FY406_RS00055 WP_003088924.1 13908..14711(-) (vicX) [Streptococcus ratti strain ATCC 31377]
MTETGFKYSILASGSSGNSFYLETPQKKILVDAGLSGKKISQLMTGIDRKLDDVDAILITHEHKDHIHGVGVLARKYGLD
IYANEETWQAMDGLIGKIDTSQKHIFEMGKTLTFGDIDIESFGVSHDAAKPQFYRFMKDGKSFVMLTDTGYVSDRMAGLI
ENADGYLIESNHDIEILRSGVYPWRLKQRILSDKGHLSNDDGAETMIRTLGNKTKKIYLGHLSKENNIKELAHMTMENAL
MQADLAVGHDFKIYDTSPDIPLPLARI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=383538 FY406_RS00055 WP_003088924.1 13908..14711(-) (vicX) [Streptococcus ratti strain ATCC 31377]
ATGACAGAAACAGGTTTTAAATACAGCATTCTGGCTTCTGGATCAAGCGGCAATAGTTTTTATCTTGAAACTCCACAGAA
AAAAATTTTGGTTGATGCTGGGCTCTCAGGTAAAAAAATCAGTCAGCTAATGACGGGTATTGACCGAAAATTAGACGATG
TTGATGCCATTTTGATTACGCATGAGCACAAGGATCATATCCATGGCGTCGGTGTTTTAGCCAGAAAATATGGCCTGGAT
ATTTATGCTAATGAAGAAACTTGGCAGGCTATGGATGGCCTCATTGGCAAAATTGATACCAGTCAAAAGCACATTTTTGA
AATGGGCAAAACGCTGACCTTTGGTGATATTGATATTGAGAGTTTTGGTGTCAGCCACGATGCTGCCAAACCCCAGTTCT
ACCGTTTTATGAAAGATGGGAAGAGCTTTGTGATGTTGACAGATACCGGCTATGTCAGTGATCGAATGGCAGGTCTCATT
GAAAATGCTGACGGCTATCTGATTGAATCCAACCATGATATTGAAATTTTACGCTCCGGCGTTTATCCATGGCGGCTAAA
ACAGCGGATTTTGTCAGACAAAGGCCACCTTTCAAATGATGACGGTGCAGAAACCATGATCAGAACGCTGGGCAATAAAA
CCAAGAAAATTTATTTGGGCCACCTCAGTAAGGAAAATAATATTAAGGAATTGGCTCATATGACCATGGAAAATGCTCTT
ATGCAGGCGGACTTGGCTGTAGGCCATGATTTTAAAATTTATGATACTTCGCCTGATATTCCTCTGCCTTTGGCAAGGAT
TTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

89.513

100

0.895

Multiple sequence alignment