Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FX981_RS07795 Genome accession   NZ_CP043404
Coordinates   1565072..1565614 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain PgKB20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1560072..1570614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS07770 (FX981_01555) - 1561075..1561485 (-) 411 WP_024424061.1 hypothetical protein -
  FX981_RS07775 (FX981_01556) - 1561501..1562820 (-) 1320 WP_149126082.1 hydrolase -
  FX981_RS07780 (FX981_01557) - 1563116..1563322 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  FX981_RS07785 (FX981_01558) ychF 1563539..1564639 (+) 1101 WP_024424059.1 redox-regulated ATPase YchF -
  FX981_RS07790 (FX981_01559) rpsF 1564748..1565035 (+) 288 WP_024424058.1 30S ribosomal protein S6 -
  FX981_RS07795 (FX981_01560) ssbA 1565072..1565614 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  FX981_RS07800 (FX981_01561) rpsR 1565655..1565894 (+) 240 WP_008359105.1 30S ribosomal protein S18 -
  FX981_RS07805 (FX981_01562) - 1566098..1567063 (+) 966 WP_149126083.1 ABC transporter ATP-binding protein -
  FX981_RS07810 (FX981_01563) opuFB 1567056..1568573 (+) 1518 WP_025093672.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  FX981_RS07815 (FX981_01564) - 1568765..1569736 (+) 972 WP_244948502.1 ring-cleaving dioxygenase -
  FX981_RS07820 (FX981_01565) - 1569733..1570341 (+) 609 WP_034622294.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=383503 FX981_RS07795 WP_007497456.1 1565072..1565614(+) (ssbA) [Bacillus safensis strain PgKB20]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=383503 FX981_RS07795 WP_007497456.1 1565072..1565614(+) (ssbA) [Bacillus safensis strain PgKB20]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment