NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	KHP_RS08155	Genome accession	NC_017382
Coordinates	398682..399692 (-)	Length	336 a.a.
NCBI ID	WP_000664516.1	Uniprot ID	-
Organism	Helicobacter pylori 51
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 393682..404692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHP_RS01965 (KHP_0368)	-	393762..394136 (-)	375	WP_000772153.1	chemotaxis response regulator CheY	-
KHP_RS01970 (KHP_0369)	-	394427..395029 (+)	603	WP_000291633.1	outer membrane protein	-
KHP_RS01980 (KHP_0370)	-	395161..395568 (-)	408	WP_000906078.1	hypothetical protein	-
KHP_RS01985 (KHP_0371)	-	395571..395813 (-)	243	WP_000944397.1	PP0621 family protein	-
KHP_RS01990 (KHP_0372)	rsmG	395807..396343 (-)	537	WP_001068812.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
KHP_RS01995 (KHP_0373)	queA	396340..397377 (-)	1038	WP_000657343.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
KHP_RS02000 (KHP_0374)	tatC	397381..398139 (-)	759	WP_000461204.1	twin-arginine translocase subunit TatC	-
KHP_RS02005 (KHP_0375)	tatB	398132..398614 (-)	483	WP_000467612.1	Sec-independent protein translocase protein TatB	-
KHP_RS08155 (KHP_0376)	ruvB	398682..399692 (-)	1011	WP_000664516.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KHP_RS08160 (KHP_0377)	panB	399693..400505 (-)	813	WP_000062653.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
KHP_RS02020 (KHP_0378)	-	400655..401377 (+)	723	WP_000523338.1	hypothetical protein	-
KHP_RS02025 (KHP_0379)	-	401367..402221 (+)	855	WP_041202015.1	outer membrane beta-barrel protein	-
KHP_RS02030 (KHP_0380)	-	402230..403168 (+)	939	WP_000911206.1	outer membrane beta-barrel protein	-
KHP_RS02035 (KHP_0381)	-	403178..404500 (+)	1323	WP_000423097.1	M23 family metallopeptidase	-

Sequence

Protein

Download Length: 336 a.a. Molecular weight: 37307.27 Da Isoelectric Point: 6.0715

                                >NTDB_id=38298 KHP_RS08155 WP_000664516.1 398682..399692(-) (ruvB) [Helicobacter pylori 51]

MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN

IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT

RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM

DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK

THALLKIPTLNPQTLF

Nucleotide

Download Length: 1011 bp

                                >NTDB_id=38298 KHP_RS08155 WP_000664516.1 398682..399692(-) (ruvB) [Helicobacter pylori 51]

ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA

AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG

ATCACATGCTCTTTTTTGGTCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT

ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT

TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG

ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT

AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT

AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA

GTAGAGGCACGCCAAGAATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG

GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT

GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA

TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGCTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCCAAA

ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Helicobacter pylori 26695	97.619	100	0.976
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.87	96.131	0.518
ruvB	Streptococcus pneumoniae TIGR4	50.774	96.131	0.488
ruvB	Streptococcus pneumoniae R6	50.774	96.131	0.488
ruvB	Streptococcus pneumoniae D39	50.774	96.131	0.488
ruvB	Synechocystis sp. PCC 6803	51.104	94.345	0.482

Detailed information NTG0038298