Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY167_RS16840 Genome accession   NZ_CP043332
Coordinates   3632910..3633434 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain CRPM10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3627910..3638434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY167_RS16835 (FY167_16835) uvrA 3629823..3632657 (-) 2835 WP_004249165.1 excinuclease ABC subunit UvrA -
  FY167_RS16840 (FY167_16840) ssb 3632910..3633434 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FY167_RS16845 (FY167_16845) - 3633796..3634572 (+) 777 WP_064506348.1 winged helix-turn-helix domain-containing protein -
  FY167_RS16850 (FY167_16850) - 3634562..3635044 (+) 483 WP_185166175.1 FidL-like protein -
  FY167_RS16855 (FY167_16855) - 3635444..3635998 (+) 555 WP_064506349.1 fimbrial protein -
  FY167_RS16860 (FY167_16860) - 3636043..3636609 (+) 567 WP_262381323.1 fimbrial protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=382933 FY167_RS16840 WP_004249162.1 3632910..3633434(+) (ssb) [Proteus mirabilis strain CRPM10]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=382933 FY167_RS16840 WP_004249162.1 3632910..3633434(+) (ssb) [Proteus mirabilis strain CRPM10]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment