Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FXF61_RS09180 Genome accession   NZ_CP043320
Coordinates   2012079..2013446 (+) Length   455 a.a.
NCBI ID   WP_151184977.1    Uniprot ID   A0A5J6QDW7
Organism   Pseudomonas sp. C27(2019)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007079..2018446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS09160 (FXF61_09160) xseA 2007435..2008802 (+) 1368 WP_151184974.1 exodeoxyribonuclease VII large subunit -
  FXF61_RS09165 (FXF61_09165) - 2008904..2010160 (+) 1257 WP_151186058.1 mechanosensitive ion channel family protein -
  FXF61_RS09170 (FXF61_09170) - 2010258..2010488 (+) 231 WP_151184975.1 PP0621 family protein -
  FXF61_RS09175 (FXF61_09175) pilS 2010481..2012076 (+) 1596 WP_151184976.1 PAS domain-containing sensor histidine kinase Regulator
  FXF61_RS09180 (FXF61_09180) pilR 2012079..2013446 (+) 1368 WP_151184977.1 sigma-54 dependent transcriptional regulator Regulator
  FXF61_RS09185 (FXF61_09185) - 2013482..2013919 (+) 438 WP_151184978.1 hypothetical protein -
  FXF61_RS09190 (FXF61_09190) - 2013957..2014373 (+) 417 WP_151186059.1 META domain-containing protein -
  FXF61_RS09195 (FXF61_09195) - 2014487..2015776 (+) 1290 WP_151184979.1 M18 family aminopeptidase -
  FXF61_RS09200 (FXF61_09200) - 2015832..2016929 (-) 1098 WP_151184980.1 DUF1513 domain-containing protein -
  FXF61_RS09205 (FXF61_09205) - 2016932..2017951 (-) 1020 WP_151186060.1 imelysin family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 51086.22 Da        Isoelectric Point: 6.5063

>NTDB_id=382863 FXF61_RS09180 WP_151184977.1 2012079..2013446(+) (pilR) [Pseudomonas sp. C27(2019)]
MSQQTALIIDDEPDIRELLEITLGRMNLRTRSACNVKEAYQWLAREHFDLCLTDMRLPDGTGLDIIEFVQKNHSHTPIAM
ITAYGCIETATQALKAGAFDFITKPVDLERLRELVSSALRLGEADTAVQITEGPLLGHSVPMQKLRNKIDKLARSQAPVY
ISGESGSGKELVARQIHLQGSRAKQPFIPVNCGAIPTELMESEFFGHKKGSFSGANEDKPGLFQAAHGGTLFLDEVADLP
LSMQVKLLRALQEKAIRPVGSQQEHLVDVRILSATHKNLNHEVAHERFRQDLYYRLNVIELAVPPLRERPEDIELLSESI
LKRLSADSTAVHLHPDALLKLQSYSFSGNVRELENMLERAYTLADGEYIHAHDLQFQHAALLKTQVASQHSQSAPPQPEH
SLEHVDNLEGHLEDIERKLITQALEETRWNRTAAAQRLGLSFRSLRYRLKKLGID

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=382863 FXF61_RS09180 WP_151184977.1 2012079..2013446(+) (pilR) [Pseudomonas sp. C27(2019)]
ATGAGCCAACAAACAGCCCTGATCATTGATGACGAGCCGGATATCCGTGAACTGTTAGAGATCACCCTCGGTCGTATGAA
TCTGCGCACACGCAGTGCTTGCAATGTCAAAGAGGCCTATCAGTGGCTGGCTCGCGAACATTTTGACTTATGTTTAACTG
ATATGCGCCTGCCTGACGGCACGGGCTTAGATATCATTGAGTTTGTACAAAAAAACCATAGCCATACCCCGATTGCTATG
ATTACCGCCTATGGCTGCATAGAAACGGCCACACAAGCTCTTAAGGCCGGCGCCTTTGACTTTATTACTAAGCCTGTTGA
TTTAGAACGTCTGCGCGAACTGGTCAGTAGCGCACTGCGCCTAGGCGAAGCTGATACCGCGGTCCAGATTACTGAAGGCC
CCTTGCTCGGCCACTCAGTCCCCATGCAAAAATTACGCAATAAAATTGATAAGCTGGCCCGCAGTCAAGCTCCAGTGTAC
ATCAGTGGCGAGTCCGGCAGCGGTAAAGAGTTAGTCGCACGGCAAATCCACTTACAAGGCTCACGCGCCAAACAACCCTT
TATTCCAGTTAACTGTGGCGCCATTCCCACTGAACTGATGGAAAGTGAGTTTTTTGGGCATAAAAAAGGCAGCTTTAGCG
GTGCTAACGAGGACAAGCCCGGCCTATTTCAAGCAGCCCATGGCGGCACCTTATTTTTAGATGAAGTGGCTGATCTGCCG
TTATCCATGCAAGTAAAATTGTTACGTGCTCTGCAAGAAAAAGCCATTCGACCCGTCGGCAGCCAACAAGAACACCTGGT
TGATGTACGCATTTTAAGCGCGACACATAAAAACCTTAACCATGAGGTTGCCCACGAACGCTTTCGCCAAGACCTCTATT
ACCGCCTAAATGTGATTGAACTAGCGGTCCCGCCACTGCGTGAGCGCCCTGAAGACATCGAACTGCTCAGCGAATCCATT
CTCAAGCGTTTAAGCGCTGACTCTACTGCGGTTCACTTGCATCCTGATGCGCTGCTCAAACTGCAAAGCTACAGCTTTTC
TGGCAATGTGCGCGAACTGGAAAACATGCTAGAGCGTGCTTATACCTTGGCTGATGGTGAATATATTCACGCTCACGATC
TACAATTTCAGCATGCAGCACTGCTCAAAACACAGGTTGCTAGCCAGCACAGTCAGTCCGCACCTCCCCAACCCGAGCAT
TCGTTAGAGCATGTTGATAATTTAGAAGGACACCTTGAAGACATTGAGCGCAAGTTGATCACTCAGGCTCTTGAAGAAAC
GCGCTGGAATCGAACCGCGGCAGCGCAGCGTTTAGGCTTAAGTTTCCGCTCACTGCGCTACCGCTTAAAAAAGCTCGGCA
TTGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(412-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

70.897

100

0.712
  pilR Acinetobacter baumannii strain A118

50.429

100

0.516
  luxO Vibrio cholerae strain A1552

36.123

99.78

0.36

Multiple sequence alignment