Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FXF61_RS09175 Genome accession   NZ_CP043320
Coordinates   2010481..2012076 (+) Length   531 a.a.
NCBI ID   WP_151184976.1    Uniprot ID   A0A5J6QA69
Organism   Pseudomonas sp. C27(2019)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005481..2017076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS09155 (FXF61_09155) rpsB 2006458..2007186 (-) 729 WP_151184973.1 30S ribosomal protein S2 -
  FXF61_RS09160 (FXF61_09160) xseA 2007435..2008802 (+) 1368 WP_151184974.1 exodeoxyribonuclease VII large subunit -
  FXF61_RS09165 (FXF61_09165) - 2008904..2010160 (+) 1257 WP_151186058.1 mechanosensitive ion channel family protein -
  FXF61_RS09170 (FXF61_09170) - 2010258..2010488 (+) 231 WP_151184975.1 PP0621 family protein -
  FXF61_RS09175 (FXF61_09175) pilS 2010481..2012076 (+) 1596 WP_151184976.1 PAS domain-containing sensor histidine kinase Regulator
  FXF61_RS09180 (FXF61_09180) pilR 2012079..2013446 (+) 1368 WP_151184977.1 sigma-54 dependent transcriptional regulator Regulator
  FXF61_RS09185 (FXF61_09185) - 2013482..2013919 (+) 438 WP_151184978.1 hypothetical protein -
  FXF61_RS09190 (FXF61_09190) - 2013957..2014373 (+) 417 WP_151186059.1 META domain-containing protein -
  FXF61_RS09195 (FXF61_09195) - 2014487..2015776 (+) 1290 WP_151184979.1 M18 family aminopeptidase -
  FXF61_RS09200 (FXF61_09200) - 2015832..2016929 (-) 1098 WP_151184980.1 DUF1513 domain-containing protein -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 59154.09 Da        Isoelectric Point: 8.9754

>NTDB_id=382862 FXF61_RS09175 WP_151184976.1 2010481..2012076(+) (pilS) [Pseudomonas sp. C27(2019)]
MTNSNLAVSGQQGQRILRLYHLYRLLIGFALVLLIASDLDGHLLEITHSQLFHYSSWTYLIVNIIATASMHNTERLLPVF
TLALFDVAQLSLLFYAAGGTPSGIGNLIIVAVAVANILLRGRIGLLIAAMAATGIIYLTFYLSLSNPAASNQYMQAGILG
TLCFAAALFVQDISRRLRASEYLAKQRANVVANLEELNALIIQRMRTGILVLDAKHRVLQANQAALSMIGCEKLLGRPLK
PHFPALIKSLAQWQSNPSLRSNPIQSMTSGTQLQANFAKLENNQNGQILVFLEDSSQLNQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLHESSHLDSADLRLTQIIQDQSRRMNTVIENVLQLSRQRQAEPQLLDLKYWLHRFVSEFRDKTTPN
RILHLTTKGRSLQTHMDPHQLDQVLMNLVENGMRYSSKLNAQSQVWLHLYRHPTTDLPTLEVHDDGPGVALEDQHNLFEP
FFTTENKGTGLGLYISRELCESNQAHLDFAPRENGGSCFRITFAHSHKLSA

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=382862 FXF61_RS09175 WP_151184976.1 2010481..2012076(+) (pilS) [Pseudomonas sp. C27(2019)]
GTGACTAACAGCAACCTCGCTGTATCAGGTCAGCAAGGGCAGCGCATCTTGCGTCTGTACCATCTGTACCGCTTATTGAT
TGGCTTTGCTTTAGTGCTACTAATTGCCAGTGATTTAGATGGGCATTTGCTTGAAATAACCCATAGTCAACTGTTTCATT
ACAGCAGCTGGACTTACCTTATTGTCAATATAATCGCTACCGCCAGCATGCATAACACTGAGCGTTTGCTGCCTGTATTT
ACCCTAGCGTTATTTGATGTGGCACAACTGAGTTTATTATTCTACGCAGCGGGTGGAACACCCAGCGGCATTGGCAATCT
GATTATTGTTGCTGTTGCCGTCGCCAATATTTTATTACGTGGACGTATCGGCCTGCTAATTGCAGCAATGGCCGCCACCG
GCATTATTTATCTGACATTTTACTTAAGCCTGTCTAACCCAGCAGCCAGCAACCAATATATGCAGGCGGGCATCCTCGGC
ACGCTATGTTTTGCCGCCGCACTTTTTGTTCAAGACATCAGTCGTCGCTTGCGTGCCAGTGAATATTTAGCAAAACAACG
CGCTAATGTTGTCGCCAATTTAGAAGAGCTCAATGCGCTGATTATTCAGCGTATGCGCACCGGTATTTTAGTGCTGGATG
CTAAGCATCGCGTATTACAGGCCAATCAAGCAGCCTTAAGCATGATTGGTTGTGAGAAGCTGCTAGGACGCCCCCTCAAG
CCACACTTTCCCGCTTTAATAAAAAGCTTAGCGCAATGGCAGAGCAACCCATCTTTGCGCAGCAACCCCATTCAATCGAT
GACCAGCGGCACGCAACTGCAAGCGAACTTCGCCAAACTGGAAAACAATCAGAATGGGCAAATACTGGTTTTTTTAGAAG
ACAGCTCACAACTCAACCAGCAAGCGCAGCAACTCAAACTGGTCGCTCTAGGTCGCCTAACGGCTGGAATTGCTCACGAA
ATACGCAACCCCTTAGGCGCAATCAGCCATGCTGCGCAATTGCTGCACGAATCAAGTCATCTCGATAGCGCCGACCTGCG
CTTAACACAAATTATTCAAGACCAATCACGGCGCATGAATACCGTAATTGAAAATGTTCTACAACTGTCAAGACAACGCC
AAGCGGAACCGCAGCTGCTTGACTTGAAATATTGGCTGCATCGCTTTGTTAGCGAATTTAGAGATAAAACCACACCCAAT
AGGATACTGCACCTCACCACTAAAGGCCGTAGTTTACAAACCCATATGGATCCACACCAACTTGATCAAGTGCTGATGAA
CTTAGTCGAAAACGGCATGCGCTACAGCAGCAAACTCAACGCACAAAGCCAGGTTTGGCTGCACCTTTACCGCCACCCCA
CAACAGATTTACCCACACTAGAAGTCCATGACGACGGCCCTGGCGTCGCCCTTGAAGATCAACACAATCTTTTTGAGCCT
TTTTTTACTACTGAAAACAAGGGTACCGGACTGGGCTTGTATATTTCCCGCGAACTCTGTGAAAGTAACCAAGCCCATTT
AGACTTTGCCCCCCGTGAAAACGGCGGCAGCTGCTTTAGAATAACCTTTGCCCACTCGCATAAATTGAGCGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QA69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.132

99.812

0.61

Multiple sequence alignment