Detailed information NTG0382837

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: HF584_RS00945
• Genome accession: NZ_CP051165
• Coordinates: 201824..202510 (+)
• Length: 228 a.a.
• NCBI ID: WP_054190082.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NGA84b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 196824..207510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF584_RS00930 (HF584_07925)	-	196939..199569 (+)	2631	WP_054190086.1	valine--tRNA ligase	-
HF584_RS00935 (HF584_07920)	-	199582..200853 (+)	1272	WP_054190085.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
HF584_RS00940 (HF584_07915)	-	201120..201827 (+)	708	WP_054190083.1	A24 family peptidase	-
HF584_RS00945 (HF584_07910)	ysxA/radC	201824..202510 (+)	687	WP_054190082.1	DNA repair protein RadC	Machinery gene
HF584_RS00950 (HF584_07905)	-	202578..202862 (+)	285	WP_000171859.1	hypothetical protein	-
HF584_RS00955 (HF584_07900)	-	202979..203176 (-)	198	WP_000025835.1	hypothetical protein	-
HF584_RS00960 (HF584_07895)	-	203336..203809 (+)	474	WP_054190081.1	DUF4930 family protein	-
HF584_RS00965 (HF584_07890)	-	203883..204002 (+)	120	WP_054190080.1	hypothetical protein	-
HF584_RS00970 (HF584_07885)	mreC	204200..205042 (+)	843	WP_054190079.1	rod shape-determining protein MreC	-
HF584_RS00975 (HF584_07880)	mreD	205042..205572 (+)	531	WP_054190078.1	rod shape-determining protein MreD	-
HF584_RS00980 (HF584_07875)	rplU	205808..206116 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
HF584_RS00985 (HF584_07870)	-	206122..206442 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HF584_RS00990 (HF584_07865)	rpmA	206454..206738 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25265.16 Da
• Isoelectric Point: 6.4966

>NTDB_id=382837 HF584_RS00945 WP_054190082.1 201824..202510(+) (ysxA/radC) [Staphylococcus aureus strain NGA84b]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNPIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKENCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=382837 HF584_RS00945 WP_054190082.1 201824..202510(+) (ysxA/radC) [Staphylococcus aureus strain NGA84b]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTGATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAACTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGGAGAGCTGAAAATAACCCTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTGAATTCAAAAA
ATGTAGTGATTAAAGAAAACTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377