Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KHP_RS02960 Genome accession   NC_017382
Coordinates   592379..593272 (-) Length   297 a.a.
NCBI ID   WP_000481612.1    Uniprot ID   -
Organism   Helicobacter pylori 51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587379..598272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS02935 (KHP_0558) mobA 587570..588175 (-) 606 WP_000795343.1 molybdenum cofactor guanylyltransferase MobA -
  KHP_RS02940 (KHP_0559) moaA 588261..589220 (+) 960 WP_000959539.1 GTP 3',8-cyclase MoaA -
  KHP_RS02945 - 589456..591006 (+) 1551 WP_000711054.1 hypothetical protein -
  KHP_RS02950 (KHP_0561) - 591017..591997 (+) 981 WP_001130746.1 hypothetical protein -
  KHP_RS02955 (KHP_0562) - 592056..592370 (+) 315 WP_000678874.1 YkgJ family cysteine cluster protein -
  KHP_RS02960 (KHP_0563) pilA 592379..593272 (-) 894 WP_000481612.1 signal recognition particle-docking protein FtsY Machinery gene
  KHP_RS02965 (KHP_0564) - 593279..593836 (-) 558 WP_001220373.1 hypothetical protein -
  KHP_RS02970 (KHP_0565) - 593961..594608 (+) 648 WP_000816639.1 5-formyltetrahydrofolate cyclo-ligase -
  KHP_RS02975 (KHP_0566) rny 594586..596097 (+) 1512 WP_041202077.1 ribonuclease Y -
  KHP_RS02980 (KHP_0567) - 596098..597414 (-) 1317 WP_267462334.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33028.26 Da        Isoelectric Point: 6.9871

>NTDB_id=38281 KHP_RS02960 WP_000481612.1 592379..593272(-) (pilA) [Helicobacter pylori 51]
MFNFFKKIVNKIKGEEVKEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=38281 KHP_RS02960 WP_000481612.1 592379..593272(-) (pilA) [Helicobacter pylori 51]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGGCTAAAGAGAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGACATTCAATACGATTTGATAGAGAGCTTGTTAAATC
ATTTAGGCGATTCAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTATGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATTTAATCGTGGGGGTTAATGGGGCGGGCAAAACCACCACGAT
CGCCAAACTCGCCAAGCTCTCTTTAAAACAGCATAAAAAAGCGCTTTTAGGGGCAGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAGTTATGGGGCGAAAAGCTTAACATTCAAGTCATCAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACTAACCTTAAAAACGAGCTTTCTAAAATCGCGCGCACCTGCTCTAAAGTTTTAAAAGACGCCCCCTTTTACAAATTCC
TTATTTTAGACGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAGACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATCTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.449

89.899

0.364

Multiple sequence alignment