Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SP670_RS02960 Genome accession   NC_014498
Coordinates   554190..554921 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 549190..559921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS02935 (SP670_0589) dnaK 549329..551152 (+) 1824 WP_000034673.1 molecular chaperone DnaK -
  SP670_RS02940 - 551154..551510 (+) 357 WP_000114433.1 hypothetical protein -
  SP670_RS02945 (SP670_0590) dnaJ 551912..553048 (+) 1137 WP_001066296.1 molecular chaperone DnaJ -
  SP670_RS13795 (SP670_0591) - 553077..553253 (-) 177 WP_001811606.1 hypothetical protein -
  SP670_RS02950 (SP670_0592) - 553415..553702 (-) 288 WP_000777760.1 hypothetical protein -
  SP670_RS02955 (SP670_0593) - 553712..554122 (-) 411 WP_001278304.1 HIT family protein -
  SP670_RS02960 (SP670_0594) pptA 554190..554921 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SP670_RS02965 (SP670_0595) - 554918..555967 (+) 1050 WP_000653768.1 ABC transporter permease -
  SP670_RS02970 (SP670_0596) - 556135..556464 (-) 330 WP_000132583.1 hypothetical protein -
  SP670_RS02975 (SP670_0597) - 556741..557079 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  SP670_RS02980 (SP670_0598) comE/blpR 557084..557821 (+) 738 WP_001219134.1 LytTR family DNA-binding domain-containing protein Regulator
  SP670_RS02985 (SP670_0599) - 557835..559175 (+) 1341 WP_001099894.1 sensor histidine kinase -
  SP670_RS02990 (SP670_0600) blpC 559219..559374 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=38280 SP670_RS02960 WP_000889923.1 554190..554921(+) (pptA) [Streptococcus pneumoniae 670-6B]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=38280 SP670_RS02960 WP_000889923.1 554190..554921(+) (pptA) [Streptococcus pneumoniae 670-6B]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment