Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHP_RS02820 Genome accession   NC_017382
Coordinates   559898..561418 (+) Length   506 a.a.
NCBI ID   WP_000611091.1    Uniprot ID   -
Organism   Helicobacter pylori 51     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 554898..566418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS02790 (KHP_0530) moaC 555047..555523 (+) 477 WP_001131558.1 cyclic pyranopterin monophosphate synthase MoaC -
  KHP_RS02795 (KHP_0531) hpaA 555642..556424 (+) 783 WP_000646653.1 flagellar sheath lipoprotein HpaA -
  KHP_RS02800 (KHP_0532) - 556451..557287 (+) 837 WP_001037770.1 outer membrane protein -
  KHP_RS02805 (KHP_0533) tig 557400..558755 (+) 1356 WP_001047830.1 trigger factor -
  KHP_RS02810 (KHP_0534) clpP 558776..559363 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  KHP_RS02815 (KHP_0535) def 559368..559895 (+) 528 WP_001185825.1 peptide deformylase -
  KHP_RS02820 (KHP_0536) comM 559898..561418 (+) 1521 WP_000611091.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KHP_RS02825 (KHP_0537) - 561443..563503 (+) 2061 WP_001158852.1 heavy metal translocating P-type ATPase -
  KHP_RS02830 (KHP_0538) - 563545..564153 (+) 609 Protein_553 restriction endonuclease subunit S -
  KHP_RS02840 (KHP_0539) hofF 564541..566039 (-) 1499 Protein_554 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57253.32 Da        Isoelectric Point: 8.3918

>NTDB_id=38280 KHP_RS02820 WP_000611091.1 559898..561418(+) (comM) [Helicobacter pylori 51]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQMVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=38280 KHP_RS02820 WP_000611091.1 559898..561418(+) (comM) [Helicobacter pylori 51]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCTTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTGAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAACAAGACAG
CACCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGTGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAACCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGTAAGATTGAATACGAAAC
CTCTTTTCTATTTGTGGGGGCTCAAAACCCTTGCTTGTGTGGGAATTTACTCAGCATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAAATGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment