Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P411_RS13295 Genome accession   NZ_CP050998
Coordinates   2574847..2575383 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O39:NM str. F8704-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2569847..2580383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P411_RS13275 soxR 2571575..2572039 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  P411_RS13280 soxS 2572125..2572448 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  P411_RS13285 pdeC 2572451..2574037 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  P411_RS13290 yjcB 2574467..2574748 (+) 282 WP_001295689.1 YjcB family protein -
  P411_RS13295 ssb 2574847..2575383 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  P411_RS13300 uvrA 2575637..2578459 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  P411_RS13305 yjbR 2578494..2578850 (-) 357 WP_000155674.1 MmcQ/YjbR family DNA-binding protein -
  P411_RS13310 yjbQ 2578854..2579270 (-) 417 WP_000270376.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  P411_RS13315 aphA 2579381..2580094 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=382409 P411_RS13295 WP_000168305.1 2574847..2575383(-) (ssb) [Escherichia coli O39:NM str. F8704-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=382409 P411_RS13295 WP_000168305.1 2574847..2575383(-) (ssb) [Escherichia coli O39:NM str. F8704-2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489