Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSUW23_RS20610 Genome accession   NC_014479
Coordinates   4011010..4011528 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus spizizenii str. W23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4006010..4016528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS20580 (BSUW23_20340) - 4006518..4007873 (+) 1356 WP_003219216.1 MFS transporter -
  BSUW23_RS20585 (BSUW23_20345) - 4007906..4008460 (-) 555 WP_003219218.1 sugar O-acetyltransferase -
  BSUW23_RS20590 (BSUW23_20350) - 4008478..4008858 (-) 381 WP_003219220.1 VOC family protein -
  BSUW23_RS20595 (BSUW23_20355) - 4008914..4009849 (-) 936 WP_003219221.1 LacI family DNA-binding transcriptional regulator -
  BSUW23_RS20600 (BSUW23_20360) xth 4009908..4010666 (-) 759 WP_003219223.1 exodeoxyribonuclease III -
  BSUW23_RS20605 (BSUW23_20365) rpsR 4010727..4010966 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BSUW23_RS20610 (BSUW23_20370) ssbA 4011010..4011528 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSUW23_RS20615 (BSUW23_20375) rpsF 4011569..4011856 (-) 288 WP_003219230.1 30S ribosomal protein S6 -
  BSUW23_RS20620 (BSUW23_20380) ychF 4011967..4013067 (-) 1101 WP_013308094.1 redox-regulated ATPase YchF -
  BSUW23_RS20625 (BSUW23_20385) - 4013194..4015197 (-) 2004 WP_003219234.1 molybdopterin-dependent oxidoreductase -
  BSUW23_RS20630 (BSUW23_20390) - 4015248..4015454 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=38231 BSUW23_RS20610 WP_003219228.1 4011010..4011528(-) (ssbA) [Bacillus spizizenii str. W23]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=38231 BSUW23_RS20610 WP_003219228.1 4011010..4011528(-) (ssbA) [Bacillus spizizenii str. W23]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGAGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment