Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | HPPN135_RS04275 | Genome accession | NC_017379 |
| Coordinates | 882713..883264 (-) | Length | 183 a.a. |
| NCBI ID | WP_000635143.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Puno135 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 877713..888264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPN135_RS04255 (HPPN135_04335) | ruvC | 879984..880457 (-) | 474 | WP_001221180.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HPPN135_RS04260 (HPPN135_04340) | - | 880589..881314 (+) | 726 | WP_000646757.1 | NYN domain-containing protein | - |
| HPPN135_RS04270 (HPPN135_04345) | - | 881883..882668 (-) | 786 | Protein_837 | DUF3519 domain-containing protein | - |
| HPPN135_RS04275 (HPPN135_04350) | ruvA | 882713..883264 (-) | 552 | WP_000635143.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HPPN135_RS04280 (HPPN135_04355) | - | 883289..885133 (-) | 1845 | WP_000051041.1 | FapA family protein | - |
| HPPN135_RS04285 (HPPN135_04360) | murJ | 885226..886686 (+) | 1461 | WP_000913547.1 | murein biosynthesis integral membrane protein MurJ | - |
| HPPN135_RS04290 (HPPN135_04365) | cysS | 886687..888084 (+) | 1398 | WP_000471323.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20076.64 Da Isoelectric Point: 7.3594
>NTDB_id=38209 HPPN135_RS04275 WP_000635143.1 882713..883264(-) (ruvA) [Helicobacter pylori Puno135]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPACNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPACNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
Nucleotide
Download Length: 552 bp
>NTDB_id=38209 HPPN135_RS04275 WP_000635143.1 882713..883264(-) (ruvA) [Helicobacter pylori Puno135]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
93.443 |
100 |
0.934 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |