Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FYA21_RS02385 Genome accession   NZ_CP043180
Coordinates   479253..479993 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain PG20180064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474253..484993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS02365 (FYA21_02365) aroB 474795..475877 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  FYA21_RS02370 (FYA21_02370) aroK 475906..476475 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FYA21_RS02375 (FYA21_02375) pilQ 476487..478652 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  FYA21_RS02380 (FYA21_02380) pilP 478715..479242 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FYA21_RS02385 (FYA21_02385) pilO 479253..479993 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FYA21_RS02390 (FYA21_02390) pilN 479990..480631 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  FYA21_RS02395 (FYA21_02395) pilM 480631..481689 (-) 1059 WP_213062576.1 pilus assembly protein PilM Machinery gene
  FYA21_RS02400 (FYA21_02400) ponA 481851..484406 (+) 2556 WP_141395034.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=381998 FYA21_RS02385 WP_000076101.1 479253..479993(-) (pilO) [Acinetobacter baumannii strain PG20180064]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=381998 FYA21_RS02385 WP_000076101.1 479253..479993(-) (pilO) [Acinetobacter baumannii strain PG20180064]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment