Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FYA21_RS02390 Genome accession   NZ_CP043180
Coordinates   479990..480631 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain PG20180064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474990..485631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS02370 (FYA21_02370) aroK 475906..476475 (-) 570 WP_000643712.1 shikimate kinase AroK -
  FYA21_RS02375 (FYA21_02375) pilQ 476487..478652 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  FYA21_RS02380 (FYA21_02380) pilP 478715..479242 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  FYA21_RS02385 (FYA21_02385) pilO 479253..479993 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  FYA21_RS02390 (FYA21_02390) pilN 479990..480631 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  FYA21_RS02395 (FYA21_02395) pilM 480631..481689 (-) 1059 WP_213062576.1 pilus assembly protein PilM Machinery gene
  FYA21_RS02400 (FYA21_02400) ponA 481851..484406 (+) 2556 WP_141395034.1 penicillin-binding protein PBP1a -
  FYA21_RS02405 (FYA21_02405) - 484424..485248 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  FYA21_RS02410 (FYA21_02410) - 485251..485583 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=381999 FYA21_RS02390 WP_000201224.1 479990..480631(-) (pilN) [Acinetobacter baumannii strain PG20180064]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=381999 FYA21_RS02390 WP_000201224.1 479990..480631(-) (pilN) [Acinetobacter baumannii strain PG20180064]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment