Detailed information NTG0381571

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: HCU70_RS11010
• Genome accession: NZ_CP050690
• Coordinates: 2227493..2228179 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain PMB179-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2222493..2233179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCU70_RS10995 (HCU70_10995)	-	2222605..2225235 (+)	2631	WP_000425364.1	valine--tRNA ligase	-
HCU70_RS11000 (HCU70_11000)	-	2225248..2226519 (+)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
HCU70_RS11005 (HCU70_11005)	-	2226789..2227496 (+)	708	WP_000261115.1	A24 family peptidase	-
HCU70_RS11010 (HCU70_11010)	ysxA/radC	2227493..2228179 (+)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
HCU70_RS11015 (HCU70_11015)	-	2228247..2228531 (+)	285	WP_000171854.1	hypothetical protein	-
HCU70_RS11020 (HCU70_11020)	-	2228648..2228845 (-)	198	WP_000025835.1	hypothetical protein	-
HCU70_RS11025 (HCU70_11025)	-	2229005..2229478 (+)	474	WP_001236734.1	DUF4930 family protein	-
HCU70_RS11030 (HCU70_11030)	-	2229552..2229671 (+)	120	WP_000840602.1	hypothetical protein	-
HCU70_RS11035 (HCU70_11035)	mreC	2229871..2230713 (+)	843	WP_000911030.1	rod shape-determining protein MreC	-
HCU70_RS11040 (HCU70_11040)	mreD	2230713..2231243 (+)	531	WP_001259923.1	rod shape-determining protein MreD	-
HCU70_RS11045 (HCU70_11045)	rplU	2231479..2231787 (+)	309	WP_000457384.1	50S ribosomal protein L21	-
HCU70_RS11050 (HCU70_11050)	-	2231793..2232113 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HCU70_RS11055 (HCU70_11055)	rpmA	2232125..2232409 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=381571 HCU70_RS11010 WP_000692870.1 2227493..2228179(+) (ysxA/radC) [Staphylococcus aureus strain PMB179-1]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=381571 HCU70_RS11010 WP_000692870.1 2227493..2228179(+) (ysxA/radC) [Staphylococcus aureus strain PMB179-1]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377