Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PB2503_RS10600 Genome accession   NC_014414
Coordinates   2236946..2237410 (-) Length   154 a.a.
NCBI ID   WP_013301256.1    Uniprot ID   E0TIG3
Organism   Parvularcula bermudensis HTCC2503     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2231946..2242410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PB2503_RS10580 (PB2503_11149) - 2232648..2233214 (-) 567 WP_013301251.1 HNH endonuclease -
  PB2503_RS10585 (PB2503_11159) - 2233507..2234463 (+) 957 WP_013301253.1 fatty acid desaturase family protein -
  PB2503_RS10590 (PB2503_11164) - 2234490..2235863 (-) 1374 WP_013301254.1 glutamate--cysteine ligase -
  PB2503_RS10595 (PB2503_11169) - 2235939..2236730 (-) 792 WP_202944374.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PB2503_RS10600 (PB2503_11174) ssb 2236946..2237410 (-) 465 WP_013301256.1 single-stranded DNA-binding protein Machinery gene
  PB2503_RS10605 (PB2503_11179) - 2237593..2237886 (+) 294 WP_013301257.1 hypothetical protein -
  PB2503_RS10610 (PB2503_11184) - 2237952..2240120 (+) 2169 WP_013301258.1 TonB-dependent receptor -
  PB2503_RS10615 (PB2503_11189) - 2240287..2241126 (+) 840 WP_013301259.1 OmpW/AlkL family protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17015.77 Da        Isoelectric Point: 5.3024

>NTDB_id=38141 PB2503_RS10600 WP_013301256.1 2236946..2237410(-) (ssb) [Parvularcula bermudensis HTCC2503]
MAGSVNKVILIGNLGQDPEVRQFNNGGQVCNLRIATSENWKDKNSGERREKTEWHSVAIFSEPLVRVAQNYLKKGSKVYI
EGQLETRKWQDKDGNDRYSTEVVLRPYRSELTMLDSRGGDQMGGGYGQQISGGGADRGGSGGGQNFDLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=38141 PB2503_RS10600 WP_013301256.1 2236946..2237410(-) (ssb) [Parvularcula bermudensis HTCC2503]
ATGGCGGGCAGCGTCAATAAAGTCATTTTGATCGGAAATCTCGGTCAGGACCCAGAAGTTCGGCAGTTCAATAATGGCGG
CCAGGTGTGCAATCTTCGGATTGCGACATCGGAAAATTGGAAAGACAAGAACAGTGGGGAACGTCGGGAAAAGACCGAAT
GGCATAGCGTCGCCATTTTTTCCGAGCCCCTTGTTCGGGTCGCGCAGAACTATCTCAAAAAGGGCTCGAAAGTGTATATT
GAGGGCCAGCTTGAGACTCGCAAATGGCAAGACAAGGACGGCAATGATCGGTACTCCACCGAAGTCGTCCTACGCCCCTA
TCGCTCCGAGCTGACGATGCTCGACAGTCGCGGCGGCGACCAGATGGGCGGGGGCTATGGCCAGCAAATTTCCGGCGGCG
GGGCCGATCGCGGCGGATCCGGCGGCGGACAAAATTTCGACCTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TIG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.714

100

0.565
  ssb Glaesserella parasuis strain SC1401

52.083

93.506

0.487
  ssb Neisseria meningitidis MC58

41.341

100

0.481
  ssb Neisseria gonorrhoeae MS11

48.837

83.766

0.409

Multiple sequence alignment