Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FYB06_RS09385 Genome accession   NZ_CP043111
Coordinates   1963590..1964951 (+) Length   453 a.a.
NCBI ID   WP_010928233.1    Uniprot ID   Q7W9C2
Organism   Bordetella parapertussis strain I457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958590..1969951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB06_RS09365 (FYB06_09370) - 1959636..1960310 (+) 675 WP_049788706.1 SDR family oxidoreductase -
  FYB06_RS09370 (FYB06_09375) - 1960366..1961088 (-) 723 WP_003810496.1 hypothetical protein -
  FYB06_RS09375 (FYB06_09380) - 1961092..1961670 (-) 579 WP_010926777.1 RNA polymerase sigma factor -
  FYB06_RS09380 (FYB06_09385) - 1961748..1963463 (-) 1716 WP_010928232.1 vWA domain-containing protein -
  FYB06_RS09385 (FYB06_09390) radA 1963590..1964951 (+) 1362 WP_010928233.1 DNA repair protein RadA Machinery gene
  FYB06_RS09390 (FYB06_09395) - 1964974..1965747 (+) 774 WP_010928234.1 sulfite exporter TauE/SafE family protein -
  FYB06_RS09395 (FYB06_09400) - 1965906..1966133 (+) 228 WP_010926775.1 hypothetical protein -
  FYB06_RS09400 (FYB06_09405) - 1966201..1967004 (-) 804 Protein_1861 MATE family efflux transporter -
  FYB06_RS09405 (FYB06_09410) - 1967091..1968041 (+) 951 WP_010927663.1 IS481 family transposase -
  FYB06_RS09410 (FYB06_09415) - 1968036..1968644 (-) 609 Protein_1863 MATE family efflux transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47925.03 Da        Isoelectric Point: 7.1753

>NTDB_id=381108 FYB06_RS09385 WP_010928233.1 1963590..1964951(+) (radA) [Bordetella parapertussis strain I457]
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAASSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=381108 FYB06_RS09385 WP_010928233.1 1963590..1964951(+) (radA) [Bordetella parapertussis strain I457]
ATGGCGAAATCCCGAACCATCTATGTCTGCGCCGAATGCGGCGGCACCAGCCTCAAGTGGCAGGGCAAGTGCCCGCACTG
CTCGGCCTGGAATACCCTGGAAGAAACCGTGGAGTCCGCCGCGTCCTCGGCCGGCGGGCATCGCTACGCGCCCCTGGCGG
CGGCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAAGCGCGCGAGACGCCGCGCCAGCCCACCGGGCTGGACGAGTTCGAC
CGCGTGCTGGGCGGCGGGCTGGTCGCCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCGCTGGCCTCGCTGTCGGCCACGACCAAGGTGTTGTACGTCACCGGTGAAGAGTCGGCCGAACAGGTCGCGC
TGCGGGCGCGCCGGCTGGGCCTGCAGACCGGCAATGTCGACTTGCTGGCCGAGATCCGGCTCGAGGCGATCCAGGCGGCC
GTGTCGGAACAGAAGCCGACCGTGGCGGTGATCGATTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCCGCGCCGGG
CTCGGTGTCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTGATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAACACATCGTCGACACGGTGCTGTACTTCGAGGGC
GACACGCATTCGTCGTTTCGCCTGGTGCGCGCGTTCAAGAACCGCTTTGGCGCCGTCAACGAACTGGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTTCTCTCGCAGCACCAGCAGCAGGTGGCCGGTTCCT
GCGTGCTGGCGACCCAGGAGGGCACGCGCCCGCTGCTGGTGGAAGTGCAGGCGCTCGTCGATACCTCGCATGCGCCCAAT
CCGCGGCGCCTGACGGTCGGGCTGGAGGGCAACCGCCTGGCCATGCTGCTGGCCGTCATGCACCGCCATGCGGGCGTCTC
GACCTACGACCAGGACGTGTTCGTCAATGCCGTGGGCGGGGTGCGCATCACCGAGCCGGCGGCCGACCTGCCGGTACTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCCGCCGGCCTGGTGGCGTTCGGCGAGATCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAAGCGGCCAAGCTGGGGTTCAGCGTTGCGCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCTATCGAAGGGCTGGAGATATGGGCCGTGGATCGGCTGGACGCCGCCCTGGACAAATTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7W9C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

46.07

100

0.466
  radA Streptococcus pneumoniae D39

48.26

95.143

0.459
  radA Streptococcus pneumoniae TIGR4

48.26

95.143

0.459
  radA Streptococcus mitis SK321

48.26

95.143

0.459
  radA Streptococcus pneumoniae R6

48.26

95.143

0.459
  radA Streptococcus pneumoniae Rx1

48.26

95.143

0.459

Multiple sequence alignment