Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HMPREF0462_RS08420 | Genome accession | NC_017375 |
| Coordinates | 432379..433389 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664516.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 83 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 427379..438389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0462_RS02140 (HMPREF0462_0439) | - | 427467..427841 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HMPREF0462_RS02145 (HMPREF0462_0440) | - | 428132..428734 (+) | 603 | WP_000291632.1 | outer membrane protein | - |
| HMPREF0462_RS02155 (HMPREF0462_0441) | - | 428864..429271 (-) | 408 | WP_000906072.1 | hypothetical protein | - |
| HMPREF0462_RS02160 (HMPREF0462_0442) | - | 429274..429516 (-) | 243 | WP_000944437.1 | PP0621 family protein | - |
| HMPREF0462_RS02165 (HMPREF0462_0443) | rsmG | 429510..430046 (-) | 537 | WP_001068802.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HMPREF0462_RS02170 (HMPREF0462_0444) | queA | 430043..431080 (-) | 1038 | WP_000657330.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HMPREF0462_RS02175 (HMPREF0462_0445) | tatC | 431081..431842 (-) | 762 | WP_000461148.1 | twin-arginine translocase subunit TatC | - |
| HMPREF0462_RS02180 (HMPREF0462_0446) | tatB | 431835..432311 (-) | 477 | WP_000467535.1 | Sec-independent protein translocase protein TatB | - |
| HMPREF0462_RS08420 (HMPREF0462_0447) | ruvB | 432379..433389 (-) | 1011 | WP_000664516.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HMPREF0462_RS08425 (HMPREF0462_0448) | panB | 433390..434202 (-) | 813 | WP_000062709.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HMPREF0462_RS02195 (HMPREF0462_0449) | - | 434351..435073 (+) | 723 | WP_014536440.1 | hypothetical protein | - |
| HMPREF0462_RS02200 (HMPREF0462_0450) | - | 435063..435917 (+) | 855 | WP_001870721.1 | outer membrane beta-barrel protein | - |
| HMPREF0462_RS02205 (HMPREF0462_0451) | - | 435926..436864 (+) | 939 | WP_000911219.1 | outer membrane protein | - |
| HMPREF0462_RS02210 (HMPREF0462_0452) | - | 436874..438196 (+) | 1323 | WP_000423146.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37307.27 Da Isoelectric Point: 6.0715
>NTDB_id=38101 HMPREF0462_RS08420 WP_000664516.1 432379..433389(-) (ruvB) [Helicobacter pylori 83]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=38101 HMPREF0462_RS08420 WP_000664516.1 432379..433389(-) (ruvB) [Helicobacter pylori 83]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |