Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FXO11_RS13145 Genome accession   NZ_CP043042
Coordinates   2957053..2957928 (+) Length   291 a.a.
NCBI ID   WP_148863395.1    Uniprot ID   -
Organism   Marinobacter fonticola strain CS412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2952053..2962928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO11_RS13130 - 2953218..2953664 (-) 447 WP_148863392.1 pilin -
  FXO11_RS13135 pilB 2954027..2955742 (+) 1716 WP_148863393.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FXO11_RS13140 pilC 2955745..2956965 (+) 1221 WP_148863394.1 type II secretion system F family protein Machinery gene
  FXO11_RS13145 pilD 2957053..2957928 (+) 876 WP_148863395.1 A24 family peptidase Machinery gene
  FXO11_RS13150 coaE 2957976..2958602 (+) 627 WP_148863396.1 dephospho-CoA kinase -
  FXO11_RS13155 - 2958680..2959132 (+) 453 WP_148863397.1 HIT family protein -
  FXO11_RS13160 - 2959107..2960177 (+) 1071 WP_227545901.1 hypothetical protein -
  FXO11_RS13165 tsaA 2960174..2960914 (+) 741 WP_148863398.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32557.70 Da        Isoelectric Point: 7.1245

>NTDB_id=380292 FXO11_RS13145 WP_148863395.1 2957053..2957928(+) (pilD) [Marinobacter fonticola strain CS412]
MSQFEAFLNIPWLFYPATILFSLCIGSFLNVVILRLPRMMEQDWRCQCEEFLELPDKQRKPSQKITLSSPNSTCPKCNHE
IKPWENIPVVSYLFLRGKCSACKTPISARYPIIEASTAILSVFTVYLLGATPEALWALLLVWALIALTVIDFDTQLLPDS
ITLPLLWLGLILNYFGMLTDFASAFWGAVFGYLSLWSVYWLFKLVTGKEGMGHGDFKLLGALGAWLGWQMLPAVILLSSV
VGAVIGLSLIAFKGHGREVPIPFGPYLAIAGLLALWFGPEIQALWFGYLRV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=380292 FXO11_RS13145 WP_148863395.1 2957053..2957928(+) (pilD) [Marinobacter fonticola strain CS412]
ATGTCCCAGTTTGAAGCCTTTCTGAACATACCTTGGCTCTTTTATCCTGCAACTATTCTTTTCTCCCTCTGCATAGGCAG
CTTCCTAAACGTCGTCATCCTCCGCCTCCCCAGAATGATGGAGCAGGATTGGCGCTGCCAGTGCGAGGAGTTCCTCGAAC
TCCCGGATAAACAACGCAAGCCGTCGCAAAAAATTACTCTCTCGTCCCCTAACTCCACGTGCCCCAAATGCAATCATGAG
ATCAAGCCGTGGGAGAATATTCCTGTCGTCAGCTACTTATTCCTACGCGGTAAGTGCAGTGCGTGCAAAACGCCTATTTC
GGCGCGCTACCCGATCATCGAGGCAAGTACAGCGATCCTTTCGGTGTTCACGGTTTATTTATTGGGCGCGACGCCAGAAG
CCCTTTGGGCTCTGCTGCTGGTTTGGGCGCTGATCGCGCTGACGGTTATTGATTTCGATACCCAGCTCTTGCCCGATAGC
ATCACCCTTCCCCTGCTCTGGCTAGGTTTGATCCTGAACTACTTTGGCATGTTGACCGACTTTGCCAGCGCTTTTTGGGG
CGCGGTGTTTGGGTATTTATCGCTGTGGTCCGTCTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTCATG
GGGATTTCAAGTTACTGGGGGCTCTAGGCGCCTGGCTGGGATGGCAGATGCTGCCTGCGGTGATTCTTCTATCCTCGGTG
GTGGGTGCGGTTATTGGTTTGAGCCTGATCGCGTTCAAGGGGCATGGGCGTGAAGTGCCGATTCCTTTCGGTCCTTATCT
CGCCATCGCCGGACTTTTGGCGTTATGGTTTGGTCCTGAAATCCAGGCGCTTTGGTTCGGGTACCTTCGGGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.497

98.282

0.526
  pilD Acinetobacter nosocomialis M2

53.65

94.158

0.505
  pilD Vibrio campbellii strain DS40M4

51.408

97.595

0.502
  pilD Acinetobacter baumannii D1279779

52.92

94.158

0.498
  pilD Neisseria gonorrhoeae MS11

48.828

87.973

0.43

Multiple sequence alignment