Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HB367_RS08930 Genome accession   NZ_CP050415
Coordinates   1831662..1833419 (-) Length   585 a.a.
NCBI ID   WP_034129353.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826662..1838419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS08900 (HB367_08900) - 1827251..1827802 (+) 552 WP_000913443.1 tetratricopeptide repeat protein -
  HB367_RS08905 (HB367_08905) - 1827824..1828723 (-) 900 WP_001125745.1 NUDIX domain-containing protein -
  HB367_RS08910 (HB367_08910) hemP 1828860..1829030 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  HB367_RS08915 (HB367_08915) - 1829096..1830454 (-) 1359 WP_001257352.1 sensor histidine kinase -
  HB367_RS08920 (HB367_08920) - 1830451..1831113 (-) 663 WP_001221456.1 response regulator transcription factor -
  HB367_RS08925 (HB367_08925) - 1831221..1831580 (-) 360 WP_000783086.1 NirD/YgiW/YdeI family stress tolerance protein -
  HB367_RS08930 (HB367_08930) pilB 1831662..1833419 (-) 1758 WP_034129353.1 GspE/PulE family protein Machinery gene
  HB367_RS08935 (HB367_08935) - 1833707..1834975 (+) 1269 WP_001052944.1 MgtC/SapB family protein -
  HB367_RS08940 (HB367_08940) tsaA 1834985..1835713 (-) 729 WP_005119947.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  HB367_RS08945 (HB367_08945) - 1835818..1836597 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  HB367_RS08950 (HB367_08950) - 1836652..1837521 (-) 870 WP_000117594.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66901.71 Da        Isoelectric Point: 7.0339

>NTDB_id=380146 HB367_RS08930 WP_034129353.1 1831662..1833419(-) (pilB) [Acinetobacter baumannii strain PM193665]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSVLTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKENGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGTRKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=380146 HB367_RS08930 WP_034129353.1 1831662..1833419(-) (pilB) [Acinetobacter baumannii strain PM193665]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTCTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGTTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATTCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCTAGTGACATTCACATGGAACCACGTAAAGAAAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCGGTGATTTCTCGGATTAAAATTTTAGGGCGACTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACACCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAACTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.162

100

0.376

Multiple sequence alignment