Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FXN59_RS07440 Genome accession   NZ_CP043004
Coordinates   1420069..1420518 (-) Length   149 a.a.
NCBI ID   WP_151294577.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1414294..1422533 1420069..1420518 within 0


Gene organization within MGE regions


Location: 1414294..1422533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS07410 (FXN59_07410) - 1414294..1415232 (-) 939 WP_262404524.1 type IV secretion system protein -
  FXN59_RS07415 (FXN59_07415) - 1415305..1415532 (-) 228 WP_005569656.1 EexN family lipoprotein -
  FXN59_RS07420 (FXN59_07420) - 1415546..1416277 (-) 732 WP_151294573.1 type IV secretion system protein -
  FXN59_RS07425 (FXN59_07425) - 1416288..1419059 (-) 2772 WP_151294575.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  FXN59_RS07430 (FXN59_07430) - 1419072..1419359 (-) 288 WP_148337043.1 TrbC/VirB2 family protein -
  FXN59_RS07435 (FXN59_07435) - 1419408..1419986 (-) 579 WP_392388693.1 lytic transglycosylase domain-containing protein -
  FXN59_RS07440 (FXN59_07440) ssb 1420069..1420518 (-) 450 WP_151294577.1 single-stranded DNA-binding protein Machinery gene
  FXN59_RS07445 (FXN59_07445) - 1420750..1421586 (+) 837 WP_233444010.1 hypothetical protein -
  FXN59_RS07450 (FXN59_07450) - 1421588..1421968 (+) 381 WP_148325540.1 hypothetical protein -
  FXN59_RS07455 (FXN59_07455) - 1422111..1422533 (+) 423 WP_148325539.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16618.48 Da        Isoelectric Point: 4.9949

>NTDB_id=380146 FXN59_RS07440 WP_151294577.1 1420069..1420518(-) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_973]
MAGVNKVIIVGRLGNEPEMRAMPNGEAVANISIATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGEYLHKGSQVYIEG
RLKTRKWQDQSGQDRYTTEIQGDVLQMLGDPKSTQAPAQAQAKPVTSPQPQAGTPADNFDDDIETTVLN

Nucleotide


Download         Length: 450 bp        

>NTDB_id=380146 FXN59_RS07440 WP_151294577.1 1420069..1420518(-) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGGCTGGAGTTAATAAAGTCATTATTGTTGGTCGTTTAGGCAATGAGCCGGAAATGCGCGCCATGCCGAACGGAGAAGC
TGTCGCGAATATTAGTATTGCGACCAGTGAAAGCTGGACAGATAAAAATACCGGCGAACGCCGGGAAGTAACTGAATGGC
ACCGCATTGTATTTTATCGCCGTCAAGCGGAAGTGTGCGGTGAATACCTGCATAAAGGCTCACAAGTGTACATTGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGACCAAAGCGGGCAAGACCGTTATACCACTGAAATTCAAGGTGATGTATTGCAAAT
GTTAGGTGATCCGAAATCAACACAGGCACCGGCACAAGCCCAGGCTAAACCGGTAACGTCACCACAACCGCAAGCGGGAA
CTCCAGCAGATAATTTTGATGATGATATAGAAACAACCGTTCTGAATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.894

100

0.732
  ssb Vibrio cholerae strain A1552

52.326

100

0.604
  ssb Neisseria meningitidis MC58

42.442

100

0.49
  ssb Neisseria gonorrhoeae MS11

41.279

100

0.477

Multiple sequence alignment