Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPIN_RS01775 Genome accession   NC_017372
Coordinates   355837..356847 (-) Length   336 a.a.
NCBI ID   WP_000664512.1    Uniprot ID   -
Organism   Helicobacter pylori India7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350837..361847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS01730 (HPIN_01760) - 350941..351315 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  HPIN_RS01735 (HPIN_01765) - 351636..352208 (+) 573 WP_001879972.1 outer membrane protein -
  HPIN_RS01745 (HPIN_01770) - 352340..352747 (-) 408 WP_000906100.1 hypothetical protein -
  HPIN_RS01750 (HPIN_01775) - 352750..352980 (-) 231 WP_000944369.1 PP0621 family protein -
  HPIN_RS01755 (HPIN_01780) rsmG 352974..353510 (-) 537 WP_001068829.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPIN_RS01760 (HPIN_01785) queA 353507..354544 (-) 1038 WP_000657360.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPIN_RS01765 (HPIN_01790) tatC 354545..355294 (-) 750 WP_000461253.1 twin-arginine translocase subunit TatC -
  HPIN_RS01770 (HPIN_01795) tatB 355287..355769 (-) 483 WP_000467563.1 Sec-independent protein translocase protein TatB -
  HPIN_RS01775 (HPIN_01800) ruvB 355837..356847 (-) 1011 WP_000664512.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPIN_RS01780 (HPIN_01805) panB 356848..357660 (-) 813 WP_000062672.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HPIN_RS01785 (HPIN_01810) - 357810..358532 (+) 723 WP_014536084.1 hypothetical protein -
  HPIN_RS01790 (HPIN_01815) - 358522..359379 (+) 858 WP_014536085.1 outer membrane beta-barrel protein -
  HPIN_RS01795 (HPIN_01820) - 359388..360332 (+) 945 WP_000911217.1 outer membrane beta-barrel protein -
  HPIN_RS01800 - 360342..361666 (+) 1325 Protein_349 M23 family peptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37345.36 Da        Isoelectric Point: 6.2626

>NTDB_id=37997 HPIN_RS01775 WP_000664512.1 355837..356847(-) (ruvB) [Helicobacter pylori India7]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLDITLHALKELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=37997 HPIN_RS01775 WP_000664512.1 355837..356847(-) (ruvB) [Helicobacter pylori India7]
ATGAAAGAACGGATAGTTAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACTACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATTAAAAAAGCCGCCGCCAAACTCCACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCCTGATG
GATTTAGACATCACTTTGCATGCTTTGAAGGAATTAGGAGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTAGCTAACGCTCAAGGGCGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

96.726

100

0.967
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.18

96.131

0.521
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482

Multiple sequence alignment