Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FRZ44_RS13145 Genome accession   NZ_CP042906
Coordinates   2882416..2882913 (-) Length   165 a.a.
NCBI ID   WP_151177622.1    Uniprot ID   A0A5J6MIR8
Organism   Hypericibacter terrae strain R5913     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2877416..2887913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRZ44_RS13130 (FRZ44_26490) coaD 2877488..2878060 (-) 573 WP_151177620.1 pantetheine-phosphate adenylyltransferase -
  FRZ44_RS13135 (FRZ44_26500) gyrA 2878103..2880877 (-) 2775 WP_151180278.1 DNA gyrase subunit A -
  FRZ44_RS13140 (FRZ44_26510) - 2881201..2882325 (-) 1125 WP_151177621.1 PotD/PotF family extracellular solute-binding protein -
  FRZ44_RS13145 (FRZ44_26520) ssb 2882416..2882913 (-) 498 WP_151177622.1 single-stranded DNA-binding protein Machinery gene
  FRZ44_RS13150 (FRZ44_26530) uvrA 2883220..2886132 (+) 2913 WP_151177623.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17557.27 Da        Isoelectric Point: 5.3684

>NTDB_id=379331 FRZ44_RS13145 WP_151177622.1 2882416..2882913(-) (ssb) [Hypericibacter terrae strain R5913]
MAGSVNKVILVGNLGRDPEIRSTQDGTRVANLSVATSESWRDKASGERKERTEWHRVAIFNEKLVEIAEKYLRKGSKIYV
EGALQTRKWTDQSGQEKYTTEVVLQRFRGELTMLDGRAGGGGDSPSDGDEMGSSGGYSGGGGGGGRSSGSRAPAGGGDLD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=379331 FRZ44_RS13145 WP_151177622.1 2882416..2882913(-) (ssb) [Hypericibacter terrae strain R5913]
ATGGCGGGATCGGTCAACAAAGTAATCCTGGTCGGCAATCTTGGCCGGGATCCGGAAATTCGCTCCACCCAGGACGGTAC
ACGCGTGGCGAACCTCTCGGTCGCAACCTCGGAGAGCTGGCGCGACAAGGCTTCGGGGGAGCGCAAGGAGCGCACCGAGT
GGCATCGCGTCGCCATCTTCAACGAGAAGCTGGTCGAGATCGCCGAGAAATACCTGCGCAAAGGCTCCAAGATCTATGTC
GAGGGCGCGCTCCAGACCCGGAAATGGACCGATCAGAGCGGCCAGGAGAAATACACGACCGAGGTCGTGCTGCAGCGCTT
CCGCGGCGAGTTGACGATGCTCGACGGCCGGGCTGGCGGCGGCGGGGATTCGCCGTCCGACGGCGACGAAATGGGCAGCA
GCGGCGGCTATAGCGGCGGCGGGGGCGGGGGTGGCCGTTCCTCGGGCAGCCGGGCACCGGCCGGCGGCGGCGATCTGGAC
GACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6MIR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.545
  ssb Vibrio cholerae strain A1552

49.711

100

0.521
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.442
  ssb Neisseria meningitidis MC58

40.223

100

0.436

Multiple sequence alignment