Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPF16_RS02025 | Genome accession | NC_017368 |
| Coordinates | 396455..397465 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664522.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F16 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 391455..402465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF16_RS01980 (HPF16_0384) | - | 391559..391933 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPF16_RS01985 (HPF16_0385) | - | 392224..392826 (+) | 603 | WP_000291636.1 | outer membrane protein | - |
| HPF16_RS01995 (HPF16_0386) | - | 392958..393365 (-) | 408 | WP_000906013.1 | hypothetical protein | - |
| HPF16_RS02000 (HPF16_0387) | - | 393368..393610 (-) | 243 | WP_000944393.1 | PP0621 family protein | - |
| HPF16_RS02005 (HPF16_0388) | rsmG | 393604..394140 (-) | 537 | WP_001068805.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPF16_RS02010 (HPF16_0389) | queA | 394137..395174 (-) | 1038 | WP_000657405.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPF16_RS02015 (HPF16_0390) | tatC | 395175..395912 (-) | 738 | WP_000461149.1 | twin-arginine translocase subunit TatC | - |
| HPF16_RS02020 (HPF16_0391) | tatB | 395905..396387 (-) | 483 | WP_000467586.1 | Sec-independent protein translocase protein TatB | - |
| HPF16_RS02025 (HPF16_0392) | ruvB | 396455..397465 (-) | 1011 | WP_000664522.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPF16_RS02030 (HPF16_0393) | panB | 397466..398278 (-) | 813 | WP_000062768.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPF16_RS02035 (HPF16_0394) | - | 398427..399149 (+) | 723 | WP_014535762.1 | hypothetical protein | - |
| HPF16_RS02040 (HPF16_0395) | - | 399139..399993 (+) | 855 | WP_014535763.1 | outer membrane beta-barrel protein | - |
| HPF16_RS02045 (HPF16_0396) | - | 400002..400940 (+) | 939 | WP_000911224.1 | outer membrane beta-barrel protein | - |
| HPF16_RS02050 (HPF16_0397) | - | 400950..402272 (+) | 1323 | WP_000423077.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37293.24 Da Isoelectric Point: 6.0715
>NTDB_id=37912 HPF16_RS02025 WP_000664522.1 396455..397465(-) (ruvB) [Helicobacter pylori F16]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=37912 HPF16_RS02025 WP_000664522.1 396455..397465(-) (ruvB) [Helicobacter pylori F16]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGTGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGTGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
54.18 |
96.131 |
0.521 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |